Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000002927annotation not available (1278 aa)    
Predicted Functional Partners:
NFXL1
Nuclear transcription factor, X-box binding like 1.
    
   0.898
COL26A1
Collagen type XXVI alpha 1 chain.
     
 0.702
ENSCAPP00000014271
annotation not available
 
      0.688
ENSCAPP00000010204
annotation not available
    
 0.644
ENSCAPP00000011600
annotation not available
   
 0.630
P3H1
Prolyl 3-hydroxylase 1.
    
 0.589
ITGA1
Integrin subunit alpha 1.
    
 0.588
COL6A2
Collagen type VI alpha 2 chain.
   
 0.586
COL23A1
Collagen type XXIII alpha 1 chain.
     
 0.582
ENSCAPP00000011777
annotation not available
    
 0.581
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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