UBL4A protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

UBL4A

Ubiquitin like 4A. (105 aa)

Predicted Functional Partners:

SGTA

0.998

GET4

0.998

BAG6

0.998

SGTB

0.986

GET3

0.979

ENSCAPP00000005006

0.966

TRIP12

0.951

MYSM1

0.937

FAF2

0.935

ENSCAPP00000008521

0.929

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAG6	ENSCAPP00000008521	ENSCAPP00000014393	ENSCAPP00000008521	BCL2 associated athanogene 6.	annotation not available	0.947
BAG6	FAF2	ENSCAPP00000014393	ENSCAPP00000011412	BCL2 associated athanogene 6.	Fas associated factor family member 2.	0.959
BAG6	GET3	ENSCAPP00000014393	ENSCAPP00000006145	BCL2 associated athanogene 6.	Guided entry of tail-anchored proteins factor 3, ATPase.	0.985
BAG6	GET4	ENSCAPP00000014393	ENSCAPP00000006010	BCL2 associated athanogene 6.	Guided entry of tail-anchored proteins factor 4.	0.999
BAG6	MYSM1	ENSCAPP00000014393	ENSCAPP00000004064	BCL2 associated athanogene 6.	Myb like, SWIRM and MPN domains 1.	0.504
BAG6	SGTA	ENSCAPP00000014393	ENSCAPP00000000330	BCL2 associated athanogene 6.	Small glutamine rich tetratricopeptide repeat containing alpha.	0.998
BAG6	SGTB	ENSCAPP00000014393	ENSCAPP00000010347	BCL2 associated athanogene 6.	Small glutamine rich tetratricopeptide repeat containing beta.	0.990
BAG6	UBL4A	ENSCAPP00000014393	ENSCAPP00000002946	BCL2 associated athanogene 6.	Ubiquitin like 4A.	0.998
ENSCAPP00000005006	UBL4A	ENSCAPP00000005006	ENSCAPP00000002946	annotation not available	Ubiquitin like 4A.	0.966
ENSCAPP00000008521	BAG6	ENSCAPP00000008521	ENSCAPP00000014393	annotation not available	BCL2 associated athanogene 6.	0.947
ENSCAPP00000008521	GET3	ENSCAPP00000008521	ENSCAPP00000006145	annotation not available	Guided entry of tail-anchored proteins factor 3, ATPase.	0.904
ENSCAPP00000008521	GET4	ENSCAPP00000008521	ENSCAPP00000006010	annotation not available	Guided entry of tail-anchored proteins factor 4.	0.959
ENSCAPP00000008521	MYSM1	ENSCAPP00000008521	ENSCAPP00000004064	annotation not available	Myb like, SWIRM and MPN domains 1.	0.537
ENSCAPP00000008521	UBL4A	ENSCAPP00000008521	ENSCAPP00000002946	annotation not available	Ubiquitin like 4A.	0.929
FAF2	BAG6	ENSCAPP00000011412	ENSCAPP00000014393	Fas associated factor family member 2.	BCL2 associated athanogene 6.	0.959
FAF2	UBL4A	ENSCAPP00000011412	ENSCAPP00000002946	Fas associated factor family member 2.	Ubiquitin like 4A.	0.935
GET3	BAG6	ENSCAPP00000006145	ENSCAPP00000014393	Guided entry of tail-anchored proteins factor 3, ATPase.	BCL2 associated athanogene 6.	0.985
GET3	ENSCAPP00000008521	ENSCAPP00000006145	ENSCAPP00000008521	Guided entry of tail-anchored proteins factor 3, ATPase.	annotation not available	0.904
GET3	GET4	ENSCAPP00000006145	ENSCAPP00000006010	Guided entry of tail-anchored proteins factor 3, ATPase.	Guided entry of tail-anchored proteins factor 4.	0.998
GET3	MYSM1	ENSCAPP00000006145	ENSCAPP00000004064	Guided entry of tail-anchored proteins factor 3, ATPase.	Myb like, SWIRM and MPN domains 1.	0.658