ENSCAPP00000002988 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCAPP00000002988

annotation not available (172 aa)

Predicted Functional Partners:

ENSCAPP00000007831

0.863

LHX3

0.863

LDB2

0.809

LDB1

0.809

SRF

0.615

GATA3

0.588

TCF3

0.562

ENSCAPP00000011786

0.562

TCF4

0.562

ENSCAPP00000016580

0.559

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000002988	ENSCAPP00000007831	ENSCAPP00000002988	ENSCAPP00000007831	annotation not available	annotation not available	0.863
ENSCAPP00000002988	ENSCAPP00000011786	ENSCAPP00000002988	ENSCAPP00000011786	annotation not available	annotation not available	0.562
ENSCAPP00000002988	ENSCAPP00000016580	ENSCAPP00000002988	ENSCAPP00000016580	annotation not available	annotation not available	0.559
ENSCAPP00000002988	GATA3	ENSCAPP00000002988	ENSCAPP00000002419	annotation not available	GATA binding protein 3.	0.588
ENSCAPP00000002988	LDB1	ENSCAPP00000002988	ENSCAPP00000007918	annotation not available	LIM domain binding 1.	0.809
ENSCAPP00000002988	LDB2	ENSCAPP00000002988	ENSCAPP00000007810	annotation not available	LIM domain binding 2.	0.809
ENSCAPP00000002988	LHX3	ENSCAPP00000002988	ENSCAPP00000017416	annotation not available	LIM homeobox 3.	0.863
ENSCAPP00000002988	SRF	ENSCAPP00000002988	ENSCAPP00000004937	annotation not available	Serum response factor.	0.615
ENSCAPP00000002988	TCF3	ENSCAPP00000002988	ENSCAPP00000002686	annotation not available	Transcription factor 3.	0.562
ENSCAPP00000002988	TCF4	ENSCAPP00000002988	ENSCAPP00000015336	annotation not available	Transcription factor 4.	0.562
ENSCAPP00000007831	ENSCAPP00000002988	ENSCAPP00000007831	ENSCAPP00000002988	annotation not available	annotation not available	0.863
ENSCAPP00000007831	LDB1	ENSCAPP00000007831	ENSCAPP00000007918	annotation not available	LIM domain binding 1.	0.853
ENSCAPP00000007831	LDB2	ENSCAPP00000007831	ENSCAPP00000007810	annotation not available	LIM domain binding 2.	0.709
ENSCAPP00000007831	LHX3	ENSCAPP00000007831	ENSCAPP00000017416	annotation not available	LIM homeobox 3.	0.522
ENSCAPP00000011786	ENSCAPP00000002988	ENSCAPP00000011786	ENSCAPP00000002988	annotation not available	annotation not available	0.562
ENSCAPP00000011786	ENSCAPP00000016580	ENSCAPP00000011786	ENSCAPP00000016580	annotation not available	annotation not available	0.749
ENSCAPP00000011786	GATA3	ENSCAPP00000011786	ENSCAPP00000002419	annotation not available	GATA binding protein 3.	0.603
ENSCAPP00000011786	LDB1	ENSCAPP00000011786	ENSCAPP00000007918	annotation not available	LIM domain binding 1.	0.914
ENSCAPP00000011786	LDB2	ENSCAPP00000011786	ENSCAPP00000007810	annotation not available	LIM domain binding 2.	0.721
ENSCAPP00000011786	TCF3	ENSCAPP00000011786	ENSCAPP00000002686	annotation not available	Transcription factor 3.	0.633