Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
COL6A2Collagen type VI alpha 2 chain. (951 aa)    
Predicted Functional Partners:
ENSCAPP00000011600
annotation not available
   
 0.998
COL6A3
Collagen type VI alpha 3 chain.
   
 0.997
COL1A2
Collagen type I alpha 2 chain.
   
 0.979
VWA2
Von Willebrand factor A domain containing 2.
   
 0.979
ENSCAPP00000016172
annotation not available
   
 0.972
COL5A2
Collagen type V alpha 2 chain.
   
 0.963
ENSCAPP00000004380
annotation not available
   
 0.959
ITGAV
Integrin subunit alpha V.
   
 0.951
ITGA5
Integrin subunit alpha 5.
   
 0.939
COL6A6
Collagen type VI alpha 6 chain.
   
 0.937
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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