STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL6A2Collagen type VI alpha 2 chain. (951 aa)    
Predicted Functional Partners:
ENSCAPP00000011600
annotation not available
  
0.991
ENSCAPP00000016172
annotation not available
  
0.945
COL1A2
Collagen type I alpha 2 chain.
  
0.940
ITGB1
Integrin subunit beta 1.
    
 0.920
COL6A3
Collagen type VI alpha 3 chain.
   
0.918
ITGAV
Integrin subunit alpha V.
   
 0.918
ITGA1
Integrin subunit alpha 1.
   
 
 0.873
VWA2
Von Willebrand factor A domain containing 2.
   
0.866
ITGA5
Integrin subunit alpha 5.
   
 0.853
ITGA8
Integrin subunit alpha 8.
   
 0.843
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.