Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PDZD4PDZ domain containing 4. (559 aa)    
Predicted Functional Partners:
APIP
APAF1 interacting protein.
    
   0.704
CEP131
Centrosomal protein 131.
    
 
 0.655
ENSCAPP00000003261
annotation not available
   
  
 0.650
ENSCAPP00000009845
annotation not available
   
    0.601
MAP1S
Microtubule associated protein 1S.
      
 0.565
PDZD3
PDZ domain containing 3.
    
 
 0.518
FERMT2
Fermitin family member 2.
      
 0.508
SLC35F2
Solute carrier family 35 member F2.
      
 0.441
PIPOX
Pipecolic acid and sarcosine oxidase.
      
 0.440
ACTN1
Actinin alpha 1.
    
   0.409
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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