Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MITD1Microtubule interacting and trafficking domain containing 1. (191 aa)    
Predicted Functional Partners:
CHMP1A
Charged multivesicular body protein 1A.
    
 
 0.963
PGLYRP1
Peptidoglycan recognition protein 1.
      
 0.754
TMEM121
Transmembrane protein 121.
      
 0.739
ENSCAPP00000002788
annotation not available
      
 0.643
ENSCAPP00000016527
annotation not available
      
 0.643
ENSCAPP00000001476
annotation not available
      
 0.595
CAPN7
Calpain 7.
   
  
 0.586
ENSCAPP00000007435
annotation not available
      
 0.581
ENSCAPP00000014228
annotation not available
      
 0.578
ENSCAPP00000004061
annotation not available
      
 0.567
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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