PCBP4 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

PCBP4

poly(rC) binding protein 4. (403 aa)

Predicted Functional Partners:

ENSCAPP00000006614

0.897

ENSCAPP00000003691

0.886

ENSCAPP00000014392

0.886

HNRNPM

0.873

ENSCAPP00000003525

0.871

ENSCAPP00000017855

0.761

NCBP1

0.731

ENSCAPP00000001396

0.690

ENSCAPP00000001740

0.690

ENSCAPP00000007395

0.690

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000001396	ENSCAPP00000001740	ENSCAPP00000001396	ENSCAPP00000001740	annotation not available	annotation not available	0.912
ENSCAPP00000001396	ENSCAPP00000003525	ENSCAPP00000001396	ENSCAPP00000003525	annotation not available	annotation not available	0.951
ENSCAPP00000001396	ENSCAPP00000003691	ENSCAPP00000001396	ENSCAPP00000003691	annotation not available	annotation not available	0.965
ENSCAPP00000001396	ENSCAPP00000006614	ENSCAPP00000001396	ENSCAPP00000006614	annotation not available	annotation not available	0.988
ENSCAPP00000001396	ENSCAPP00000007395	ENSCAPP00000001396	ENSCAPP00000007395	annotation not available	annotation not available	0.912
ENSCAPP00000001396	ENSCAPP00000014392	ENSCAPP00000001396	ENSCAPP00000014392	annotation not available	annotation not available	0.965
ENSCAPP00000001396	ENSCAPP00000017855	ENSCAPP00000001396	ENSCAPP00000017855	annotation not available	annotation not available	0.634
ENSCAPP00000001396	HNRNPM	ENSCAPP00000001396	ENSCAPP00000010194	annotation not available	Heterogeneous nuclear ribonucleoprotein M.	0.986
ENSCAPP00000001396	NCBP1	ENSCAPP00000001396	ENSCAPP00000013706	annotation not available	Nuclear cap binding protein subunit 1.	0.824
ENSCAPP00000001396	PCBP4	ENSCAPP00000001396	ENSCAPP00000003038	annotation not available	poly(rC) binding protein 4.	0.690
ENSCAPP00000001740	ENSCAPP00000001396	ENSCAPP00000001740	ENSCAPP00000001396	annotation not available	annotation not available	0.912
ENSCAPP00000001740	ENSCAPP00000003525	ENSCAPP00000001740	ENSCAPP00000003525	annotation not available	annotation not available	0.940
ENSCAPP00000001740	ENSCAPP00000003691	ENSCAPP00000001740	ENSCAPP00000003691	annotation not available	annotation not available	0.962
ENSCAPP00000001740	ENSCAPP00000006614	ENSCAPP00000001740	ENSCAPP00000006614	annotation not available	annotation not available	0.989
ENSCAPP00000001740	ENSCAPP00000014392	ENSCAPP00000001740	ENSCAPP00000014392	annotation not available	annotation not available	0.962
ENSCAPP00000001740	ENSCAPP00000017855	ENSCAPP00000001740	ENSCAPP00000017855	annotation not available	annotation not available	0.807
ENSCAPP00000001740	HNRNPM	ENSCAPP00000001740	ENSCAPP00000010194	annotation not available	Heterogeneous nuclear ribonucleoprotein M.	0.971
ENSCAPP00000001740	NCBP1	ENSCAPP00000001740	ENSCAPP00000013706	annotation not available	Nuclear cap binding protein subunit 1.	0.722
ENSCAPP00000001740	PCBP4	ENSCAPP00000001740	ENSCAPP00000003038	annotation not available	poly(rC) binding protein 4.	0.690
ENSCAPP00000003525	ENSCAPP00000001396	ENSCAPP00000003525	ENSCAPP00000001396	annotation not available	annotation not available	0.951