STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TAF1ATATA-box binding protein associated factor, RNA polymerase I subunit A. (388 aa)    
Predicted Functional Partners:
TAF1C
TATA-box binding protein associated factor, RNA polymerase I subunit C.
  
 
 0.999
TBP
TATA-box binding protein.
    
 0.999
ENSCAPP00000015721
annotation not available
    
 0.983
HINT2
Histidine triad nucleotide binding protein 2.
    
 0.971
TAF1B
TATA-box binding protein associated factor, RNA polymerase I subunit B.
     
  0.947
RRN3
RRN3 homolog, RNA polymerase I transcription factor.
    
 0.904
EAF1
ELL associated factor 1.
   
   0.864
ENSCAPP00000003059
annotation not available
    
 0.846
ENSCAPP00000015369
annotation not available
    
 0.846
POLR1E
RNA polymerase I subunit E.
     
 0.832
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.