STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBM3RNA binding motif protein 3. (158 aa)    
Predicted Functional Partners:
HNRNPM
Heterogeneous nuclear ribonucleoprotein M.
   
 0.841
ENSCAPP00000003691
annotation not available
   
 0.837
ENSCAPP00000014392
annotation not available
   
 0.837
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.833
ENSCAPP00000006614
annotation not available
   
 0.830
UPF1
UPF1 RNA helicase and ATPase.
    
 0.828
SF3B1
Splicing factor 3b subunit 1.
   
 0.818
ENSCAPP00000017572
annotation not available
   
 0.817
SF3B2
Splicing factor 3b subunit 2.
   
 0.804
SNRPD1
Small nuclear ribonucleoprotein D1 polypeptide.
   
 0.801
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.