RBM3 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RBM3

RNA binding motif protein 3. (158 aa)

Predicted Functional Partners:

ENSCAPP00000003691

0.973

ENSCAPP00000014392

0.973

SNRPA

0.970

ENSCAPP00000014093

0.946

ELAVL1

0.929

ENSCAPP00000006614

0.915

PRMT1

0.903

SNRPB2

0.899

ENSCAPP00000003525

0.895

HNRNPM

0.888

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ELAVL1	ENSCAPP00000003525	ENSCAPP00000006967	ENSCAPP00000003525	ELAV like RNA binding protein 1.	annotation not available	0.480
ELAVL1	ENSCAPP00000003691	ENSCAPP00000006967	ENSCAPP00000003691	ELAV like RNA binding protein 1.	annotation not available	0.953
ELAVL1	ENSCAPP00000006614	ENSCAPP00000006967	ENSCAPP00000006614	ELAV like RNA binding protein 1.	annotation not available	0.968
ELAVL1	ENSCAPP00000014392	ENSCAPP00000006967	ENSCAPP00000014392	ELAV like RNA binding protein 1.	annotation not available	0.953
ELAVL1	HNRNPM	ENSCAPP00000006967	ENSCAPP00000010194	ELAV like RNA binding protein 1.	Heterogeneous nuclear ribonucleoprotein M.	0.840
ELAVL1	RBM3	ENSCAPP00000006967	ENSCAPP00000003071	ELAV like RNA binding protein 1.	RNA binding motif protein 3.	0.929
ENSCAPP00000003525	ELAVL1	ENSCAPP00000003525	ENSCAPP00000006967	annotation not available	ELAV like RNA binding protein 1.	0.480
ENSCAPP00000003525	ENSCAPP00000003691	ENSCAPP00000003525	ENSCAPP00000003691	annotation not available	annotation not available	0.977
ENSCAPP00000003525	ENSCAPP00000006614	ENSCAPP00000003525	ENSCAPP00000006614	annotation not available	annotation not available	0.989
ENSCAPP00000003525	ENSCAPP00000014093	ENSCAPP00000003525	ENSCAPP00000014093	annotation not available	annotation not available	0.861
ENSCAPP00000003525	ENSCAPP00000014392	ENSCAPP00000003525	ENSCAPP00000014392	annotation not available	annotation not available	0.977
ENSCAPP00000003525	HNRNPM	ENSCAPP00000003525	ENSCAPP00000010194	annotation not available	Heterogeneous nuclear ribonucleoprotein M.	0.974
ENSCAPP00000003525	RBM3	ENSCAPP00000003525	ENSCAPP00000003071	annotation not available	RNA binding motif protein 3.	0.895
ENSCAPP00000003525	SNRPA	ENSCAPP00000003525	ENSCAPP00000003185	annotation not available	Small nuclear ribonucleoprotein polypeptide A.	0.617
ENSCAPP00000003525	SNRPB2	ENSCAPP00000003525	ENSCAPP00000013114	annotation not available	Small nuclear ribonucleoprotein polypeptide B2.	0.587
ENSCAPP00000003691	ELAVL1	ENSCAPP00000003691	ENSCAPP00000006967	annotation not available	ELAV like RNA binding protein 1.	0.953
ENSCAPP00000003691	ENSCAPP00000003525	ENSCAPP00000003691	ENSCAPP00000003525	annotation not available	annotation not available	0.977
ENSCAPP00000003691	ENSCAPP00000006614	ENSCAPP00000003691	ENSCAPP00000006614	annotation not available	annotation not available	0.984
ENSCAPP00000003691	ENSCAPP00000014093	ENSCAPP00000003691	ENSCAPP00000014093	annotation not available	annotation not available	0.879
ENSCAPP00000003691	HNRNPM	ENSCAPP00000003691	ENSCAPP00000010194	annotation not available	Heterogeneous nuclear ribonucleoprotein M.	0.992