STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX21DExD-box helicase 21. (642 aa)    
Predicted Functional Partners:
SF3B1
Splicing factor 3b subunit 1.
   
 0.966
MYBBP1A
MYB binding protein 1a.
   
 0.954
ERCC6
ERCC excision repair 6, chromatin remodeling factor.
  
 0.942
BAZ1B
Bromodomain adjacent to zinc finger domain 1B.
     
 0.927
GTPBP4
GTP binding protein 4.
   
 0.919
WDR12
WD repeat domain 12.
   
 0.918
ENSCAPP00000010582
annotation not available
   
 0.914
DEK
DEK proto-oncogene.
     
 0.914
BOP1
BOP1 ribosomal biogenesis factor.
   
 0.912
DDX18
DEAD-box helicase 18.
  
0.899
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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