GUCY2D protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GUCY2D

Guanylate cyclase 2D, retinal. (1031 aa)

Predicted Functional Partners:

NPPA

0.908

ENSCAPP00000005889

0.889

ENSCAPP00000010092

0.856

MOCS1

0.806

NCALD

0.803

PDE6C

0.798

PDE6A

0.797

PDE6B

0.796

PDE2A

0.792

ENSCAPP00000006156

0.788

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000005889	ENSCAPP00000006156	ENSCAPP00000005889	ENSCAPP00000006156	annotation not available	annotation not available	0.887
ENSCAPP00000005889	ENSCAPP00000010092	ENSCAPP00000005889	ENSCAPP00000010092	annotation not available	annotation not available	0.855
ENSCAPP00000005889	GUCY2D	ENSCAPP00000005889	ENSCAPP00000003085	annotation not available	Guanylate cyclase 2D, retinal.	0.889
ENSCAPP00000006156	ENSCAPP00000005889	ENSCAPP00000006156	ENSCAPP00000005889	annotation not available	annotation not available	0.887
ENSCAPP00000006156	ENSCAPP00000010092	ENSCAPP00000006156	ENSCAPP00000010092	annotation not available	annotation not available	0.885
ENSCAPP00000006156	GUCY2D	ENSCAPP00000006156	ENSCAPP00000003085	annotation not available	Guanylate cyclase 2D, retinal.	0.788
ENSCAPP00000006156	MOCS1	ENSCAPP00000006156	ENSCAPP00000012931	annotation not available	Molybdenum cofactor synthesis 1.	0.791
ENSCAPP00000006156	NCALD	ENSCAPP00000006156	ENSCAPP00000018172	annotation not available	Neurocalcin delta.	0.752
ENSCAPP00000006156	NPPA	ENSCAPP00000006156	ENSCAPP00000013161	annotation not available	Natriuretic peptide A.	0.906
ENSCAPP00000006156	PDE2A	ENSCAPP00000006156	ENSCAPP00000014616	annotation not available	Phosphodiesterase 2A.	0.795
ENSCAPP00000006156	PDE6A	ENSCAPP00000006156	ENSCAPP00000017917	annotation not available	Phosphodiesterase 6A.	0.801
ENSCAPP00000006156	PDE6B	ENSCAPP00000006156	ENSCAPP00000011875	annotation not available	Phosphodiesterase 6B.	0.801
ENSCAPP00000006156	PDE6C	ENSCAPP00000006156	ENSCAPP00000005939	annotation not available	Phosphodiesterase 6C.	0.800
ENSCAPP00000010092	ENSCAPP00000005889	ENSCAPP00000010092	ENSCAPP00000005889	annotation not available	annotation not available	0.855
ENSCAPP00000010092	ENSCAPP00000006156	ENSCAPP00000010092	ENSCAPP00000006156	annotation not available	annotation not available	0.885
ENSCAPP00000010092	GUCY2D	ENSCAPP00000010092	ENSCAPP00000003085	annotation not available	Guanylate cyclase 2D, retinal.	0.856
ENSCAPP00000010092	PDE6A	ENSCAPP00000010092	ENSCAPP00000017917	annotation not available	Phosphodiesterase 6A.	0.434
ENSCAPP00000010092	PDE6B	ENSCAPP00000010092	ENSCAPP00000011875	annotation not available	Phosphodiesterase 6B.	0.480
GUCY2D	ENSCAPP00000005889	ENSCAPP00000003085	ENSCAPP00000005889	Guanylate cyclase 2D, retinal.	annotation not available	0.889
GUCY2D	ENSCAPP00000006156	ENSCAPP00000003085	ENSCAPP00000006156	Guanylate cyclase 2D, retinal.	annotation not available	0.788