STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATP2C2ATPase secretory pathway Ca2+ transporting 2. (928 aa)    
Predicted Functional Partners:
PLN
Phospholamban.
   
 0.877
ATP2C1
ATPase secretory pathway Ca2+ transporting 1.
    
   0.835
ENSCAPP00000002787
annotation not available
   
 0.762
CMIP
c-Maf inducing protein.
      
 0.757
ENSCAPP00000012952
annotation not available
   
 0.716
TMEM165
Transmembrane protein 165.
  
 
 0.705
NFXL1
Nuclear transcription factor, X-box binding like 1.
      
 0.657
SOD1
Superoxide dismutase 1.
   
 
 0.649
PHB
Prohibitin.
   
  0.623
MRPL19
Mitochondrial ribosomal protein L19.
   
 
 0.621
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.