Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PADI6Peptidyl arginine deiminase 6. (671 aa)    
Predicted Functional Partners:
UHRF1
Ubiquitin like with PHD and ring finger domains 1.
    
 
 0.928
SFN
Stratifin.
    
   0.894
PADI2
Peptidyl arginine deiminase 2.
     
  0.841
PADI3
Peptidyl arginine deiminase 3.
     
  0.841
ENSCAPP00000001460
annotation not available
    
 
 0.793
SKP1
S-phase kinase associated protein 1.
    
   0.779
TUBA4A
Tubulin alpha 4a.
    
   0.779
DNAJC11
DnaJ heat shock protein family (Hsp40) member C11.
      
 0.686
ENSCAPP00000017518
annotation not available
      
 0.685
SMARCD1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1.
    
 
 0.606
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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