Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
WDR4WD repeat domain 4. (374 aa)    
Predicted Functional Partners:
METTL1
Methyltransferase like 1.
   
 0.999
TRMT61A
tRNA methyltransferase 61A.
   
 
 0.998
TRMT6
tRNA methyltransferase 6.
   
 
 0.997
TRMT11
tRNA methyltransferase 11 homolog.
   
 
 0.981
PUS1
Pseudouridine synthase 1.
   
 
 0.973
THUMPD3
THUMP domain containing 3.
     
  0.947
FAM118A
Family with sequence similarity 118 member A.
    
  0.919
BUD23
BUD23 rRNA methyltransferase and ribosome maturation factor.
   
 
 0.898
TRMT10B
tRNA methyltransferase 10B.
   
 0.891
TRMT10A
tRNA methyltransferase 10A.
   
 0.891
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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