Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MMABMetabolism of cobalamin associated B. (240 aa)    
Predicted Functional Partners:
MMAA
Metabolism of cobalamin associated A.
      
 0.935
MMADHC
Metabolism of cobalamin associated D.
      
 0.899
LMBRD1
LMBR1 domain containing 1.
      
 0.883
MMUT
methylmalonyl-CoA mutase.
      
 0.874
ENSCAPP00000000390
annotation not available
    
 0.805
MMACHC
Metabolism of cobalamin associated C.
     
 0.757
NMD3
NMD3 ribosome export adaptor.
      
 0.748
ENSCAPP00000004891
annotation not available
      
 0.746
VPS37D
VPS37D subunit of ESCRT-I.
      
 0.676
ENSCAPP00000014738
annotation not available
      
 0.675
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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