RBM18 protein (Cavia aperea) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RBM18

RNA binding motif protein 18. (147 aa)

Predicted Functional Partners:

LDB2

0.684

LDB1

0.684

SRF

0.615

TMOD2

0.609

TCF3

0.542

ENSCAPP00000011786

0.542

TCF4

0.542

GSN

0.525

TMOD3

0.521

GATA3

0.495

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000011786	GATA3	ENSCAPP00000011786	ENSCAPP00000002419	annotation not available	GATA binding protein 3.	0.603
ENSCAPP00000011786	LDB1	ENSCAPP00000011786	ENSCAPP00000007918	annotation not available	LIM domain binding 1.	0.914
ENSCAPP00000011786	LDB2	ENSCAPP00000011786	ENSCAPP00000007810	annotation not available	LIM domain binding 2.	0.721
ENSCAPP00000011786	RBM18	ENSCAPP00000011786	ENSCAPP00000003157	annotation not available	RNA binding motif protein 18.	0.542
ENSCAPP00000011786	TCF3	ENSCAPP00000011786	ENSCAPP00000002686	annotation not available	Transcription factor 3.	0.633
GATA3	ENSCAPP00000011786	ENSCAPP00000002419	ENSCAPP00000011786	GATA binding protein 3.	annotation not available	0.603
GATA3	LDB1	ENSCAPP00000002419	ENSCAPP00000007918	GATA binding protein 3.	LIM domain binding 1.	0.782
GATA3	LDB2	ENSCAPP00000002419	ENSCAPP00000007810	GATA binding protein 3.	LIM domain binding 2.	0.782
GATA3	RBM18	ENSCAPP00000002419	ENSCAPP00000003157	GATA binding protein 3.	RNA binding motif protein 18.	0.495
GATA3	SRF	ENSCAPP00000002419	ENSCAPP00000004937	GATA binding protein 3.	Serum response factor.	0.793
GATA3	TCF3	ENSCAPP00000002419	ENSCAPP00000002686	GATA binding protein 3.	Transcription factor 3.	0.703
GATA3	TCF4	ENSCAPP00000002419	ENSCAPP00000015336	GATA binding protein 3.	Transcription factor 4.	0.603
GSN	RBM18	ENSCAPP00000015153	ENSCAPP00000003157	Gelsolin.	RNA binding motif protein 18.	0.525
GSN	TMOD2	ENSCAPP00000015153	ENSCAPP00000013693	Gelsolin.	Tropomodulin 2.	0.730
GSN	TMOD3	ENSCAPP00000015153	ENSCAPP00000006597	Gelsolin.	Tropomodulin 3.	0.645
LDB1	ENSCAPP00000011786	ENSCAPP00000007918	ENSCAPP00000011786	LIM domain binding 1.	annotation not available	0.914
LDB1	GATA3	ENSCAPP00000007918	ENSCAPP00000002419	LIM domain binding 1.	GATA binding protein 3.	0.782
LDB1	RBM18	ENSCAPP00000007918	ENSCAPP00000003157	LIM domain binding 1.	RNA binding motif protein 18.	0.684
LDB1	TCF3	ENSCAPP00000007918	ENSCAPP00000002686	LIM domain binding 1.	Transcription factor 3.	0.866
LDB1	TCF4	ENSCAPP00000007918	ENSCAPP00000015336	LIM domain binding 1.	Transcription factor 4.	0.914