Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBM18RNA binding motif protein 18. (147 aa)    
Predicted Functional Partners:
TMOD2
Tropomodulin 2.
    
   0.959
GSN
Gelsolin.
    
   0.952
TMOD3
Tropomodulin 3.
    
   0.842
CAPG
Capping actin protein, gelsolin like.
    
   0.816
SRF
Serum response factor.
    
 0.610
PPP1R7
Protein phosphatase 1 regulatory subunit 7.
    
 0.598
WDR90
WD repeat domain 90.
    
  0.594
SYF2
SYF2 pre-mRNA splicing factor.
      
 0.573
SUPT7L
SPT7 like, STAGA complex gamma subunit.
      
 0.569
DCTN3
Dynactin subunit 3.
      
 0.560
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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