ENSCAPP00000003162 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

ENSCAPP00000003162

annotation not available (323 aa)

Predicted Functional Partners:

ELAVL2

0.953

ELAVL3

0.875

RBM45

0.655

PABPC4L

0.645

HNRNPAB

0.638

TRAF1

0.610

TRAF2

0.610

TRA2B

0.601

ENSCAPP00000001396

0.585

ENSCAPP00000012462

0.584

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ELAVL2	ELAVL3	ENSCAPP00000001775	ENSCAPP00000018141	ELAV like RNA binding protein 2.	ELAV like RNA binding protein 3.	0.976
ELAVL2	ENSCAPP00000001396	ENSCAPP00000001775	ENSCAPP00000001396	ELAV like RNA binding protein 2.	annotation not available	0.590
ELAVL2	ENSCAPP00000003162	ENSCAPP00000001775	ENSCAPP00000003162	ELAV like RNA binding protein 2.	annotation not available	0.953
ELAVL2	ENSCAPP00000012462	ENSCAPP00000001775	ENSCAPP00000012462	ELAV like RNA binding protein 2.	annotation not available	0.582
ELAVL2	HNRNPAB	ENSCAPP00000001775	ENSCAPP00000002406	ELAV like RNA binding protein 2.	Heterogeneous nuclear ribonucleoprotein A/B.	0.651
ELAVL2	PABPC4L	ENSCAPP00000001775	ENSCAPP00000000572	ELAV like RNA binding protein 2.	poly(A) binding protein cytoplasmic 4 like.	0.640
ELAVL2	RBM45	ENSCAPP00000001775	ENSCAPP00000007454	ELAV like RNA binding protein 2.	RNA binding motif protein 45.	0.943
ELAVL2	TRA2B	ENSCAPP00000001775	ENSCAPP00000000693	ELAV like RNA binding protein 2.	Transformer 2 beta homolog.	0.504
ELAVL2	TRAF1	ENSCAPP00000001775	ENSCAPP00000001914	ELAV like RNA binding protein 2.	TNF receptor associated factor 1.	0.622
ELAVL2	TRAF2	ENSCAPP00000001775	ENSCAPP00000016857	ELAV like RNA binding protein 2.	TNF receptor associated factor 2.	0.622
ELAVL3	ELAVL2	ENSCAPP00000018141	ENSCAPP00000001775	ELAV like RNA binding protein 3.	ELAV like RNA binding protein 2.	0.976
ELAVL3	ENSCAPP00000001396	ENSCAPP00000018141	ENSCAPP00000001396	ELAV like RNA binding protein 3.	annotation not available	0.595
ELAVL3	ENSCAPP00000003162	ENSCAPP00000018141	ENSCAPP00000003162	ELAV like RNA binding protein 3.	annotation not available	0.875
ELAVL3	ENSCAPP00000012462	ENSCAPP00000018141	ENSCAPP00000012462	ELAV like RNA binding protein 3.	annotation not available	0.589
ELAVL3	HNRNPAB	ENSCAPP00000018141	ENSCAPP00000002406	ELAV like RNA binding protein 3.	Heterogeneous nuclear ribonucleoprotein A/B.	0.659
ELAVL3	PABPC4L	ENSCAPP00000018141	ENSCAPP00000000572	ELAV like RNA binding protein 3.	poly(A) binding protein cytoplasmic 4 like.	0.536
ELAVL3	RBM45	ENSCAPP00000018141	ENSCAPP00000007454	ELAV like RNA binding protein 3.	RNA binding motif protein 45.	0.590
ELAVL3	TRA2B	ENSCAPP00000018141	ENSCAPP00000000693	ELAV like RNA binding protein 3.	Transformer 2 beta homolog.	0.457
ELAVL3	TRAF1	ENSCAPP00000018141	ENSCAPP00000001914	ELAV like RNA binding protein 3.	TNF receptor associated factor 1.	0.622
ELAVL3	TRAF2	ENSCAPP00000018141	ENSCAPP00000016857	ELAV like RNA binding protein 3.	TNF receptor associated factor 2.	0.622