STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000003170annotation not available (344 aa)    
Predicted Functional Partners:
LRIT1
Leucine rich repeat, Ig-like and transmembrane domains 1.
 
0.813
CCDC126
Coiled-coil domain containing 126.
      
 0.760
WDR17
WD repeat domain 17.
      
 0.751
SAPCD1
Suppressor APC domain containing 1.
      
 0.740
FAM169A
Family with sequence similarity 169 member A.
    
 0.719
ENSCAPP00000017707
annotation not available
    
 0.645
PPEF2
Protein phosphatase with EF-hand domain 2.
    
 0.642
ENSCAPP00000004829
annotation not available
    
 0.613
SERPINE3
Serpin family E member 3.
     
 0.601
NTNG1
Netrin G1.
    
 0.580
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.