GEMIN4 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

GEMIN4

Gem nuclear organelle associated protein 4. (981 aa)

Predicted Functional Partners:

GEMIN8

0.999

GEMIN5

0.999

GEMIN7

0.999

DDX20

0.999

STRAP

0.998

ENSCAPP00000009578

0.995

SNRPF

0.989

AGO2

0.986

SNRPB

0.985

ENSCAPP00000017572

0.960

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGO2	DDX20	ENSCAPP00000013010	ENSCAPP00000017863	Argonaute RISC catalytic component 2.	DEAD-box helicase 20.	0.986
AGO2	GEMIN4	ENSCAPP00000013010	ENSCAPP00000003171	Argonaute RISC catalytic component 2.	Gem nuclear organelle associated protein 4.	0.986
DDX20	AGO2	ENSCAPP00000017863	ENSCAPP00000013010	DEAD-box helicase 20.	Argonaute RISC catalytic component 2.	0.986
DDX20	ENSCAPP00000009578	ENSCAPP00000017863	ENSCAPP00000009578	DEAD-box helicase 20.	annotation not available	0.996
DDX20	ENSCAPP00000017572	ENSCAPP00000017863	ENSCAPP00000017572	DEAD-box helicase 20.	annotation not available	0.969
DDX20	GEMIN4	ENSCAPP00000017863	ENSCAPP00000003171	DEAD-box helicase 20.	Gem nuclear organelle associated protein 4.	0.999
DDX20	GEMIN5	ENSCAPP00000017863	ENSCAPP00000005855	DEAD-box helicase 20.	Gem nuclear organelle associated protein 5.	0.999
DDX20	GEMIN7	ENSCAPP00000017863	ENSCAPP00000016326	DEAD-box helicase 20.	Gem nuclear organelle associated protein 7.	0.998
DDX20	GEMIN8	ENSCAPP00000017863	ENSCAPP00000002507	DEAD-box helicase 20.	Gem nuclear organelle associated protein 8.	0.998
DDX20	SNRPB	ENSCAPP00000017863	ENSCAPP00000011646	DEAD-box helicase 20.	Small nuclear ribonucleoprotein polypeptides B and B1.	0.987
DDX20	SNRPF	ENSCAPP00000017863	ENSCAPP00000004768	DEAD-box helicase 20.	Small nuclear ribonucleoprotein polypeptide F.	0.996
DDX20	STRAP	ENSCAPP00000017863	ENSCAPP00000010509	DEAD-box helicase 20.	Serine/threonine kinase receptor associated protein.	0.998
ENSCAPP00000009578	DDX20	ENSCAPP00000009578	ENSCAPP00000017863	annotation not available	DEAD-box helicase 20.	0.996
ENSCAPP00000009578	ENSCAPP00000017572	ENSCAPP00000009578	ENSCAPP00000017572	annotation not available	annotation not available	0.933
ENSCAPP00000009578	GEMIN4	ENSCAPP00000009578	ENSCAPP00000003171	annotation not available	Gem nuclear organelle associated protein 4.	0.995
ENSCAPP00000009578	GEMIN5	ENSCAPP00000009578	ENSCAPP00000005855	annotation not available	Gem nuclear organelle associated protein 5.	0.996
ENSCAPP00000009578	GEMIN7	ENSCAPP00000009578	ENSCAPP00000016326	annotation not available	Gem nuclear organelle associated protein 7.	0.996
ENSCAPP00000009578	GEMIN8	ENSCAPP00000009578	ENSCAPP00000002507	annotation not available	Gem nuclear organelle associated protein 8.	0.996
ENSCAPP00000009578	SNRPB	ENSCAPP00000009578	ENSCAPP00000011646	annotation not available	Small nuclear ribonucleoprotein polypeptides B and B1.	0.985
ENSCAPP00000009578	SNRPF	ENSCAPP00000009578	ENSCAPP00000004768	annotation not available	Small nuclear ribonucleoprotein polypeptide F.	0.992