Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000003197annotation not available (363 aa)    
Predicted Functional Partners:
ENSCAPP00000015285
annotation not available
 
     0.922
ENSCAPP00000012437
annotation not available
 
      0.900
EIF3A
Eukaryotic translation initiation factor 3 subunit A.
   
   0.898
RBM25
RNA binding motif protein 25.
   
    0.873
SON
SON DNA binding protein.
   
 
  0.873
ENSCAPP00000005247
annotation not available
   
 
 0.782
UBAP2L
Ubiquitin associated protein 2 like.
   
 
 0.782
YTHDF1
YTH N6-methyladenosine RNA binding protein 1.
    
 
 0.768
BPTF
Bromodomain PHD finger transcription factor.
   
    0.691
ENSCAPP00000010940
annotation not available
   
    0.683
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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