ENSCAPP00000003209 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSCAPP00000003209

annotation not available (150 aa)

Predicted Functional Partners:

ENSCAPP00000011427

0.965

LMBRD1

0.809

SNX17

0.704

SLC37A1

0.637

SLC37A2

0.637

ENSCAPP00000005614

0.602

TECR

0.588

ENSCAPP00000004616

0.571

ENSCAPP00000008699

0.570

EIF2B4

0.556

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EIF2B4	ENSCAPP00000003209	ENSCAPP00000013067	ENSCAPP00000003209	Eukaryotic translation initiation factor 2B subunit delta.	annotation not available	0.556
EIF2B4	ENSCAPP00000008699	ENSCAPP00000013067	ENSCAPP00000008699	Eukaryotic translation initiation factor 2B subunit delta.	annotation not available	0.447
EIF2B4	SNX17	ENSCAPP00000013067	ENSCAPP00000016088	Eukaryotic translation initiation factor 2B subunit delta.	Sorting nexin 17.	0.594
ENSCAPP00000003209	EIF2B4	ENSCAPP00000003209	ENSCAPP00000013067	annotation not available	Eukaryotic translation initiation factor 2B subunit delta.	0.556
ENSCAPP00000003209	ENSCAPP00000004616	ENSCAPP00000003209	ENSCAPP00000004616	annotation not available	annotation not available	0.571
ENSCAPP00000003209	ENSCAPP00000005614	ENSCAPP00000003209	ENSCAPP00000005614	annotation not available	annotation not available	0.602
ENSCAPP00000003209	ENSCAPP00000008699	ENSCAPP00000003209	ENSCAPP00000008699	annotation not available	annotation not available	0.570
ENSCAPP00000003209	ENSCAPP00000011427	ENSCAPP00000003209	ENSCAPP00000011427	annotation not available	annotation not available	0.965
ENSCAPP00000003209	LMBRD1	ENSCAPP00000003209	ENSCAPP00000016647	annotation not available	LMBR1 domain containing 1.	0.809
ENSCAPP00000003209	SLC37A1	ENSCAPP00000003209	ENSCAPP00000001767	annotation not available	Solute carrier family 37 member 1.	0.637
ENSCAPP00000003209	SLC37A2	ENSCAPP00000003209	ENSCAPP00000002449	annotation not available	Solute carrier family 37 member 2.	0.637
ENSCAPP00000003209	SNX17	ENSCAPP00000003209	ENSCAPP00000016088	annotation not available	Sorting nexin 17.	0.704
ENSCAPP00000003209	TECR	ENSCAPP00000003209	ENSCAPP00000008230	annotation not available	trans-2,3-enoyl-CoA reductase.	0.588
ENSCAPP00000004616	ENSCAPP00000003209	ENSCAPP00000004616	ENSCAPP00000003209	annotation not available	annotation not available	0.571
ENSCAPP00000004616	ENSCAPP00000005614	ENSCAPP00000004616	ENSCAPP00000005614	annotation not available	annotation not available	0.999
ENSCAPP00000004616	ENSCAPP00000011427	ENSCAPP00000004616	ENSCAPP00000011427	annotation not available	annotation not available	0.748
ENSCAPP00000004616	LMBRD1	ENSCAPP00000004616	ENSCAPP00000016647	annotation not available	LMBR1 domain containing 1.	0.664
ENSCAPP00000005614	ENSCAPP00000003209	ENSCAPP00000005614	ENSCAPP00000003209	annotation not available	annotation not available	0.602
ENSCAPP00000005614	ENSCAPP00000004616	ENSCAPP00000005614	ENSCAPP00000004616	annotation not available	annotation not available	0.999
ENSCAPP00000005614	ENSCAPP00000011427	ENSCAPP00000005614	ENSCAPP00000011427	annotation not available	annotation not available	0.575