FAF1 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FAF1

Fas associated factor 1. (360 aa)

Predicted Functional Partners:

VCP

0.999

UFD1

0.997

NPLOC4

0.996

UBXN6

0.980

ENSCAPP00000008370

0.978

UBAC2

0.978

NSFL1C

0.974

UBXN2B

0.974

ENSCAPP00000016289

0.972

TNFAIP1

0.940

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000008370	ENSCAPP00000016289	ENSCAPP00000008370	ENSCAPP00000016289	annotation not available	annotation not available	0.876
ENSCAPP00000008370	FAF1	ENSCAPP00000008370	ENSCAPP00000003211	annotation not available	Fas associated factor 1.	0.978
ENSCAPP00000008370	NPLOC4	ENSCAPP00000008370	ENSCAPP00000015298	annotation not available	NPL4 homolog, ubiquitin recognition factor.	0.957
ENSCAPP00000008370	NSFL1C	ENSCAPP00000008370	ENSCAPP00000008658	annotation not available	NSFL1 cofactor.	0.977
ENSCAPP00000008370	UBXN2B	ENSCAPP00000008370	ENSCAPP00000012874	annotation not available	UBX domain protein 2B.	0.977
ENSCAPP00000008370	UBXN6	ENSCAPP00000008370	ENSCAPP00000007323	annotation not available	UBX domain protein 6.	0.953
ENSCAPP00000008370	UFD1	ENSCAPP00000008370	ENSCAPP00000018444	annotation not available	Ubiquitin recognition factor in ER associated degradation 1.	0.644
ENSCAPP00000008370	VCP	ENSCAPP00000008370	ENSCAPP00000013802	annotation not available	Valosin containing protein.	0.989
ENSCAPP00000016289	ENSCAPP00000008370	ENSCAPP00000016289	ENSCAPP00000008370	annotation not available	annotation not available	0.876
ENSCAPP00000016289	FAF1	ENSCAPP00000016289	ENSCAPP00000003211	annotation not available	Fas associated factor 1.	0.972
ENSCAPP00000016289	NSFL1C	ENSCAPP00000016289	ENSCAPP00000008658	annotation not available	NSFL1 cofactor.	0.850
ENSCAPP00000016289	UBAC2	ENSCAPP00000016289	ENSCAPP00000016552	annotation not available	UBA domain containing 2.	0.818
ENSCAPP00000016289	UBXN2B	ENSCAPP00000016289	ENSCAPP00000012874	annotation not available	UBX domain protein 2B.	0.678
ENSCAPP00000016289	UBXN6	ENSCAPP00000016289	ENSCAPP00000007323	annotation not available	UBX domain protein 6.	0.690
ENSCAPP00000016289	UFD1	ENSCAPP00000016289	ENSCAPP00000018444	annotation not available	Ubiquitin recognition factor in ER associated degradation 1.	0.991
ENSCAPP00000016289	VCP	ENSCAPP00000016289	ENSCAPP00000013802	annotation not available	Valosin containing protein.	0.990
FAF1	ENSCAPP00000008370	ENSCAPP00000003211	ENSCAPP00000008370	Fas associated factor 1.	annotation not available	0.978
FAF1	ENSCAPP00000016289	ENSCAPP00000003211	ENSCAPP00000016289	Fas associated factor 1.	annotation not available	0.972
FAF1	NPLOC4	ENSCAPP00000003211	ENSCAPP00000015298	Fas associated factor 1.	NPL4 homolog, ubiquitin recognition factor.	0.996
FAF1	NSFL1C	ENSCAPP00000003211	ENSCAPP00000008658	Fas associated factor 1.	NSFL1 cofactor.	0.974