FAF1 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

FAF1

Fas associated factor 1. (360 aa)

Predicted Functional Partners:

VCP

0.998

NPLOC4

0.998

UFD1

0.998

UBXN6

0.991

UBXN2B

0.989

NSFL1C

0.987

ENSCAPP00000008370

0.985

ENSCAPP00000016289

0.979

TNFAIP1

0.961

HSPA4

0.961

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000008370	ENSCAPP00000016289	ENSCAPP00000008370	ENSCAPP00000016289	annotation not available	annotation not available	0.891
ENSCAPP00000008370	FAF1	ENSCAPP00000008370	ENSCAPP00000003211	annotation not available	Fas associated factor 1.	0.985
ENSCAPP00000008370	NPLOC4	ENSCAPP00000008370	ENSCAPP00000015298	annotation not available	NPL4 homolog, ubiquitin recognition factor.	0.970
ENSCAPP00000008370	NSFL1C	ENSCAPP00000008370	ENSCAPP00000008658	annotation not available	NSFL1 cofactor.	0.986
ENSCAPP00000008370	UBXN2B	ENSCAPP00000008370	ENSCAPP00000012874	annotation not available	UBX domain protein 2B.	0.986
ENSCAPP00000008370	UBXN6	ENSCAPP00000008370	ENSCAPP00000007323	annotation not available	UBX domain protein 6.	0.974
ENSCAPP00000008370	UFD1	ENSCAPP00000008370	ENSCAPP00000018444	annotation not available	Ubiquitin recognition factor in ER associated degradation 1.	0.666
ENSCAPP00000008370	VCP	ENSCAPP00000008370	ENSCAPP00000013802	annotation not available	Valosin containing protein.	0.991
ENSCAPP00000016289	ENSCAPP00000008370	ENSCAPP00000016289	ENSCAPP00000008370	annotation not available	annotation not available	0.891
ENSCAPP00000016289	FAF1	ENSCAPP00000016289	ENSCAPP00000003211	annotation not available	Fas associated factor 1.	0.979
ENSCAPP00000016289	NSFL1C	ENSCAPP00000016289	ENSCAPP00000008658	annotation not available	NSFL1 cofactor.	0.922
ENSCAPP00000016289	UBXN2B	ENSCAPP00000016289	ENSCAPP00000012874	annotation not available	UBX domain protein 2B.	0.784
ENSCAPP00000016289	UBXN6	ENSCAPP00000016289	ENSCAPP00000007323	annotation not available	UBX domain protein 6.	0.727
ENSCAPP00000016289	UFD1	ENSCAPP00000016289	ENSCAPP00000018444	annotation not available	Ubiquitin recognition factor in ER associated degradation 1.	0.993
ENSCAPP00000016289	VCP	ENSCAPP00000016289	ENSCAPP00000013802	annotation not available	Valosin containing protein.	0.990
FAF1	ENSCAPP00000008370	ENSCAPP00000003211	ENSCAPP00000008370	Fas associated factor 1.	annotation not available	0.985
FAF1	ENSCAPP00000016289	ENSCAPP00000003211	ENSCAPP00000016289	Fas associated factor 1.	annotation not available	0.979
FAF1	HSPA4	ENSCAPP00000003211	ENSCAPP00000017296	Fas associated factor 1.	Heat shock protein family A (Hsp70) member 4.	0.961
FAF1	NPLOC4	ENSCAPP00000003211	ENSCAPP00000015298	Fas associated factor 1.	NPL4 homolog, ubiquitin recognition factor.	0.998
FAF1	NSFL1C	ENSCAPP00000003211	ENSCAPP00000008658	Fas associated factor 1.	NSFL1 cofactor.	0.987