Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000003217annotation not available (199 aa)    
Predicted Functional Partners:
ENSCAPP00000013295
annotation not available
   
 0.996
ATL3
Atlastin GTPase 3.
    
 
 0.980
BACE1
Beta-secretase 1.
    
 0.961
LINGO1
Leucine rich repeat and Ig domain containing 1.
    
 0.959
ENSCAPP00000006355
annotation not available
    
 
 0.959
RTN2
Reticulon 2.
    
 
 0.958
RTN4R
Reticulon 4 receptor.
    
 0.958
TMEM208
Transmembrane protein 208.
    
 
 0.957
DERL2
Derlin 2.
    
   0.957
BACE2
Beta-secretase 2.
    
 0.952
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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