RPAIN protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Co-expression

Experiments

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[Homology]

Score

RPAIN

RPA interacting protein. (170 aa)

Predicted Functional Partners:

RPA1

0.959

KPNB1

0.894

ENSCAPP00000002185

0.745

ENSCAPP00000009121

0.694

ENSCAPP00000001577

0.689

SNRPA1

0.659

ENSCAPP00000005006

0.643

ENSCAPP00000008168

0.643

ENSCAPP00000016826

0.606

ANAPC16

0.600

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANAPC16	RPAIN	ENSCAPP00000001622	ENSCAPP00000003231	Anaphase promoting complex subunit 16.	RPA interacting protein.	0.600
ENSCAPP00000001577	RPAIN	ENSCAPP00000001577	ENSCAPP00000003231	annotation not available	RPA interacting protein.	0.689
ENSCAPP00000002185	ENSCAPP00000009121	ENSCAPP00000002185	ENSCAPP00000009121	annotation not available	annotation not available	0.625
ENSCAPP00000002185	ENSCAPP00000016826	ENSCAPP00000002185	ENSCAPP00000016826	annotation not available	annotation not available	0.803
ENSCAPP00000002185	RPA1	ENSCAPP00000002185	ENSCAPP00000006571	annotation not available	Replication protein A1.	0.850
ENSCAPP00000002185	RPAIN	ENSCAPP00000002185	ENSCAPP00000003231	annotation not available	RPA interacting protein.	0.745
ENSCAPP00000005006	RPAIN	ENSCAPP00000005006	ENSCAPP00000003231	annotation not available	RPA interacting protein.	0.643
ENSCAPP00000008168	RPAIN	ENSCAPP00000008168	ENSCAPP00000003231	annotation not available	RPA interacting protein.	0.643
ENSCAPP00000009121	ENSCAPP00000002185	ENSCAPP00000009121	ENSCAPP00000002185	annotation not available	annotation not available	0.625
ENSCAPP00000009121	ENSCAPP00000016826	ENSCAPP00000009121	ENSCAPP00000016826	annotation not available	annotation not available	0.536
ENSCAPP00000009121	KPNB1	ENSCAPP00000009121	ENSCAPP00000013599	annotation not available	Karyopherin subunit beta 1.	0.711
ENSCAPP00000009121	RPA1	ENSCAPP00000009121	ENSCAPP00000006571	annotation not available	Replication protein A1.	0.983
ENSCAPP00000009121	RPAIN	ENSCAPP00000009121	ENSCAPP00000003231	annotation not available	RPA interacting protein.	0.694
ENSCAPP00000016826	ENSCAPP00000002185	ENSCAPP00000016826	ENSCAPP00000002185	annotation not available	annotation not available	0.803
ENSCAPP00000016826	ENSCAPP00000009121	ENSCAPP00000016826	ENSCAPP00000009121	annotation not available	annotation not available	0.536
ENSCAPP00000016826	RPAIN	ENSCAPP00000016826	ENSCAPP00000003231	annotation not available	RPA interacting protein.	0.606
KPNB1	ENSCAPP00000009121	ENSCAPP00000013599	ENSCAPP00000009121	Karyopherin subunit beta 1.	annotation not available	0.711
KPNB1	RPA1	ENSCAPP00000013599	ENSCAPP00000006571	Karyopherin subunit beta 1.	Replication protein A1.	0.886
KPNB1	RPAIN	ENSCAPP00000013599	ENSCAPP00000003231	Karyopherin subunit beta 1.	RPA interacting protein.	0.894
RPA1	ENSCAPP00000002185	ENSCAPP00000006571	ENSCAPP00000002185	Replication protein A1.	annotation not available	0.850