Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BEND7BEN domain containing 7. (370 aa)    
Predicted Functional Partners:
LYPD6B
LY6/PLAUR domain containing 6B.
      
 0.874
ZNF219
Zinc finger protein 219.
    
   0.840
ANGEL2
Angel homolog 2.
      
 0.758
TATDN3
TatD DNase domain containing 3.
      
 0.758
RPS6KC1
Ribosomal protein S6 kinase C1.
      
 0.742
MBD3
methyl-CpG binding domain protein 3.
    
   0.735
MBD2
methyl-CpG binding domain protein 2.
    
   0.735
SHISA4
Shisa family member 4.
      
 0.698
BEND6
BEN domain containing 6.
      
 0.692
ZC3H8
Zinc finger CCCH-type containing 8.
      
 0.688
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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