Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DEFB113Defensin beta 113. (82 aa)    
Predicted Functional Partners:
DEFB124
Defensin beta 124.
  
  
 0.888
DEFB110
Defensin beta 110.
   
 
 0.849
ENSCAPP00000007533
annotation not available
   
 
 0.693
ENSCAPP00000006112
annotation not available
     
 0.676
DEFB123
Defensin beta 123.
     
 0.676
ENSCAPP00000002972
annotation not available
     
 0.586
ENSCAPP00000006357
annotation not available
   
  
 0.473
PADI3
Peptidyl arginine deiminase 3.
      
 0.454
MON1B
MON1 homolog B, secretory trafficking associated.
      
 0.445
TMEM150C
Transmembrane protein 150C.
   
  
 0.440
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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