SLFNL1 protein (Cavia aperea) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

SLFNL1

Schlafen like 1. (379 aa)

Predicted Functional Partners:

RTCB

0.955

ENSCAPP00000008058

0.849

FAM98A

0.849

FAM166A

0.647

EPRS1

0.600

RANBP2

0.583

ENSCAPP00000016792

0.571

ENSCAPP00000018174

0.571

SLC2A12

0.569

SPNS2

0.569

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000008058	FAM98A	ENSCAPP00000008058	ENSCAPP00000013248	annotation not available	Family with sequence similarity 98 member A.	0.947
ENSCAPP00000008058	RTCB	ENSCAPP00000008058	ENSCAPP00000010379	annotation not available	RNA 2',3'-cyclic phosphate and 5'-OH ligase.	0.981
ENSCAPP00000008058	SLFNL1	ENSCAPP00000008058	ENSCAPP00000003279	annotation not available	Schlafen like 1.	0.849
ENSCAPP00000016792	ENSCAPP00000018174	ENSCAPP00000016792	ENSCAPP00000018174	annotation not available	annotation not available	0.688
ENSCAPP00000016792	SLFNL1	ENSCAPP00000016792	ENSCAPP00000003279	annotation not available	Schlafen like 1.	0.571
ENSCAPP00000018174	ENSCAPP00000016792	ENSCAPP00000018174	ENSCAPP00000016792	annotation not available	annotation not available	0.688
ENSCAPP00000018174	SLFNL1	ENSCAPP00000018174	ENSCAPP00000003279	annotation not available	Schlafen like 1.	0.571
EPRS1	RANBP2	ENSCAPP00000002836	ENSCAPP00000009214	glutamyl-prolyl-tRNA synthetase 1.	RAN binding protein 2.	0.512
EPRS1	RTCB	ENSCAPP00000002836	ENSCAPP00000010379	glutamyl-prolyl-tRNA synthetase 1.	RNA 2',3'-cyclic phosphate and 5'-OH ligase.	0.444
EPRS1	SLFNL1	ENSCAPP00000002836	ENSCAPP00000003279	glutamyl-prolyl-tRNA synthetase 1.	Schlafen like 1.	0.600
FAM166A	SLFNL1	ENSCAPP00000008075	ENSCAPP00000003279	Family with sequence similarity 166 member A.	Schlafen like 1.	0.647
FAM98A	ENSCAPP00000008058	ENSCAPP00000013248	ENSCAPP00000008058	Family with sequence similarity 98 member A.	annotation not available	0.947
FAM98A	RTCB	ENSCAPP00000013248	ENSCAPP00000010379	Family with sequence similarity 98 member A.	RNA 2',3'-cyclic phosphate and 5'-OH ligase.	0.999
FAM98A	SLFNL1	ENSCAPP00000013248	ENSCAPP00000003279	Family with sequence similarity 98 member A.	Schlafen like 1.	0.849
RANBP2	EPRS1	ENSCAPP00000009214	ENSCAPP00000002836	RAN binding protein 2.	glutamyl-prolyl-tRNA synthetase 1.	0.512
RANBP2	SLFNL1	ENSCAPP00000009214	ENSCAPP00000003279	RAN binding protein 2.	Schlafen like 1.	0.583
RTCB	ENSCAPP00000008058	ENSCAPP00000010379	ENSCAPP00000008058	RNA 2',3'-cyclic phosphate and 5'-OH ligase.	annotation not available	0.981
RTCB	EPRS1	ENSCAPP00000010379	ENSCAPP00000002836	RNA 2',3'-cyclic phosphate and 5'-OH ligase.	glutamyl-prolyl-tRNA synthetase 1.	0.444
RTCB	FAM98A	ENSCAPP00000010379	ENSCAPP00000013248	RNA 2',3'-cyclic phosphate and 5'-OH ligase.	Family with sequence similarity 98 member A.	0.999
RTCB	SLC2A12	ENSCAPP00000010379	ENSCAPP00000005444	RNA 2',3'-cyclic phosphate and 5'-OH ligase.	Solute carrier family 2 member 12.	0.626