PAXIP1 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PAXIP1

PAX interacting protein 1. (1051 aa)

Predicted Functional Partners:

ENSCAPP00000015921

0.998

ENSCAPP00000001835

0.997

ASH2L

0.997

ENSCAPP00000007084

0.996

WDR5

0.992

ENSCAPP00000013410

0.991

KDM6B

0.991

ATM

0.990

RNF8

0.985

NBN

0.984

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASH2L	ENSCAPP00000001835	ENSCAPP00000005931	ENSCAPP00000001835	ASH2 like, histone lysine methyltransferase complex subunit.	annotation not available	0.995
ASH2L	ENSCAPP00000007084	ENSCAPP00000005931	ENSCAPP00000007084	ASH2 like, histone lysine methyltransferase complex subunit.	annotation not available	0.998
ASH2L	ENSCAPP00000013410	ENSCAPP00000005931	ENSCAPP00000013410	ASH2 like, histone lysine methyltransferase complex subunit.	annotation not available	0.860
ASH2L	ENSCAPP00000015921	ENSCAPP00000005931	ENSCAPP00000015921	ASH2 like, histone lysine methyltransferase complex subunit.	annotation not available	0.999
ASH2L	KDM6B	ENSCAPP00000005931	ENSCAPP00000016710	ASH2 like, histone lysine methyltransferase complex subunit.	Lysine demethylase 6B.	0.994
ASH2L	PAXIP1	ENSCAPP00000005931	ENSCAPP00000003281	ASH2 like, histone lysine methyltransferase complex subunit.	PAX interacting protein 1.	0.997
ASH2L	WDR5	ENSCAPP00000005931	ENSCAPP00000003966	ASH2 like, histone lysine methyltransferase complex subunit.	WD repeat domain 5.	0.999
ATM	ENSCAPP00000013410	ENSCAPP00000004106	ENSCAPP00000013410	ATM serine/threonine kinase.	annotation not available	0.999
ATM	NBN	ENSCAPP00000004106	ENSCAPP00000014883	ATM serine/threonine kinase.	Nibrin.	0.998
ATM	PAXIP1	ENSCAPP00000004106	ENSCAPP00000003281	ATM serine/threonine kinase.	PAX interacting protein 1.	0.990
ATM	RNF8	ENSCAPP00000004106	ENSCAPP00000018481	ATM serine/threonine kinase.	Ring finger protein 8.	0.815
ENSCAPP00000001835	ASH2L	ENSCAPP00000001835	ENSCAPP00000005931	annotation not available	ASH2 like, histone lysine methyltransferase complex subunit.	0.995
ENSCAPP00000001835	ENSCAPP00000007084	ENSCAPP00000001835	ENSCAPP00000007084	annotation not available	annotation not available	0.997
ENSCAPP00000001835	ENSCAPP00000015921	ENSCAPP00000001835	ENSCAPP00000015921	annotation not available	annotation not available	0.995
ENSCAPP00000001835	KDM6B	ENSCAPP00000001835	ENSCAPP00000016710	annotation not available	Lysine demethylase 6B.	0.990
ENSCAPP00000001835	PAXIP1	ENSCAPP00000001835	ENSCAPP00000003281	annotation not available	PAX interacting protein 1.	0.997
ENSCAPP00000001835	WDR5	ENSCAPP00000001835	ENSCAPP00000003966	annotation not available	WD repeat domain 5.	0.992
ENSCAPP00000007084	ASH2L	ENSCAPP00000007084	ENSCAPP00000005931	annotation not available	ASH2 like, histone lysine methyltransferase complex subunit.	0.998
ENSCAPP00000007084	ENSCAPP00000001835	ENSCAPP00000007084	ENSCAPP00000001835	annotation not available	annotation not available	0.997
ENSCAPP00000007084	ENSCAPP00000015921	ENSCAPP00000007084	ENSCAPP00000015921	annotation not available	annotation not available	0.998