ENSCAPP00000003291 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

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Textmining

[Homology]

Score

ENSCAPP00000003291

annotation not available (465 aa)

Predicted Functional Partners:

FUS

0.956

PTBP2

0.936

PTBP1

0.931

ENSCAPP00000003691

0.906

ENSCAPP00000014392

0.906

ENSCAPP00000007564

0.888

SIL1

0.885

ENSCAPP00000007951

0.863

ENSCAPP00000009605

0.863

ENSCAPP00000003050

0.846

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000003050	ENSCAPP00000003291	ENSCAPP00000003050	ENSCAPP00000003291	annotation not available	annotation not available	0.846
ENSCAPP00000003050	ENSCAPP00000003691	ENSCAPP00000003050	ENSCAPP00000003691	annotation not available	annotation not available	0.789
ENSCAPP00000003050	ENSCAPP00000007951	ENSCAPP00000003050	ENSCAPP00000007951	annotation not available	annotation not available	0.566
ENSCAPP00000003050	ENSCAPP00000009605	ENSCAPP00000003050	ENSCAPP00000009605	annotation not available	annotation not available	0.566
ENSCAPP00000003050	ENSCAPP00000014392	ENSCAPP00000003050	ENSCAPP00000014392	annotation not available	annotation not available	0.789
ENSCAPP00000003050	FUS	ENSCAPP00000003050	ENSCAPP00000001751	annotation not available	FUS RNA binding protein.	0.978
ENSCAPP00000003050	PTBP1	ENSCAPP00000003050	ENSCAPP00000008442	annotation not available	Polypyrimidine tract binding protein 1.	0.693
ENSCAPP00000003050	PTBP2	ENSCAPP00000003050	ENSCAPP00000008501	annotation not available	Polypyrimidine tract binding protein 2.	0.533
ENSCAPP00000003291	ENSCAPP00000003050	ENSCAPP00000003291	ENSCAPP00000003050	annotation not available	annotation not available	0.846
ENSCAPP00000003291	ENSCAPP00000003691	ENSCAPP00000003291	ENSCAPP00000003691	annotation not available	annotation not available	0.906
ENSCAPP00000003291	ENSCAPP00000007564	ENSCAPP00000003291	ENSCAPP00000007564	annotation not available	annotation not available	0.888
ENSCAPP00000003291	ENSCAPP00000007951	ENSCAPP00000003291	ENSCAPP00000007951	annotation not available	annotation not available	0.863
ENSCAPP00000003291	ENSCAPP00000009605	ENSCAPP00000003291	ENSCAPP00000009605	annotation not available	annotation not available	0.863
ENSCAPP00000003291	ENSCAPP00000014392	ENSCAPP00000003291	ENSCAPP00000014392	annotation not available	annotation not available	0.906
ENSCAPP00000003291	FUS	ENSCAPP00000003291	ENSCAPP00000001751	annotation not available	FUS RNA binding protein.	0.956
ENSCAPP00000003291	PTBP1	ENSCAPP00000003291	ENSCAPP00000008442	annotation not available	Polypyrimidine tract binding protein 1.	0.931
ENSCAPP00000003291	PTBP2	ENSCAPP00000003291	ENSCAPP00000008501	annotation not available	Polypyrimidine tract binding protein 2.	0.936
ENSCAPP00000003291	SIL1	ENSCAPP00000003291	ENSCAPP00000018108	annotation not available	SIL1 nucleotide exchange factor.	0.885
ENSCAPP00000003691	ENSCAPP00000003050	ENSCAPP00000003691	ENSCAPP00000003050	annotation not available	annotation not available	0.789
ENSCAPP00000003691	ENSCAPP00000003291	ENSCAPP00000003691	ENSCAPP00000003291	annotation not available	annotation not available	0.906