NCKAP5L protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NCKAP5L

NCK associated protein 5 like. (1314 aa)

Predicted Functional Partners:

RUVBL2

0.442

ZEB1

0.430

CDKL2

0.407

RAD9A

0.400

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDKL2	NCKAP5L	ENSCAPP00000010779	ENSCAPP00000003298	Cyclin dependent kinase like 2.	NCK associated protein 5 like.	0.407
NCKAP5L	CDKL2	ENSCAPP00000003298	ENSCAPP00000010779	NCK associated protein 5 like.	Cyclin dependent kinase like 2.	0.407
NCKAP5L	RAD9A	ENSCAPP00000003298	ENSCAPP00000016426	NCK associated protein 5 like.	RAD9 checkpoint clamp component A.	0.400
NCKAP5L	RUVBL2	ENSCAPP00000003298	ENSCAPP00000004619	NCK associated protein 5 like.	RuvB like AAA ATPase 2.	0.442
NCKAP5L	ZEB1	ENSCAPP00000003298	ENSCAPP00000011582	NCK associated protein 5 like.	Zinc finger E-box binding homeobox 1.	0.430
RAD9A	NCKAP5L	ENSCAPP00000016426	ENSCAPP00000003298	RAD9 checkpoint clamp component A.	NCK associated protein 5 like.	0.400
RUVBL2	NCKAP5L	ENSCAPP00000004619	ENSCAPP00000003298	RuvB like AAA ATPase 2.	NCK associated protein 5 like.	0.442
ZEB1	NCKAP5L	ENSCAPP00000011582	ENSCAPP00000003298	Zinc finger E-box binding homeobox 1.	NCK associated protein 5 like.	0.430