RCOR1 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RCOR1

REST corepressor 1. (561 aa)

Predicted Functional Partners:

KDM1A

0.999

PHF21A

0.998

HMG20B

0.998

ENSCAPP00000015013

0.998

HDAC1

0.998

HDAC2

0.998

RCOR3

0.986

HMG20A

0.982

ENSCAPP00000015419

0.981

ZMYM2

0.980

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000015013	HDAC1	ENSCAPP00000015013	ENSCAPP00000015327	annotation not available	Histone deacetylase 1.	0.993
ENSCAPP00000015013	HDAC2	ENSCAPP00000015013	ENSCAPP00000016491	annotation not available	Histone deacetylase 2.	0.981
ENSCAPP00000015013	HMG20A	ENSCAPP00000015013	ENSCAPP00000013054	annotation not available	High mobility group 20A.	0.427
ENSCAPP00000015013	HMG20B	ENSCAPP00000015013	ENSCAPP00000012716	annotation not available	High mobility group 20B.	0.700
ENSCAPP00000015013	KDM1A	ENSCAPP00000015013	ENSCAPP00000001968	annotation not available	Lysine demethylase 1A.	0.950
ENSCAPP00000015013	PHF21A	ENSCAPP00000015013	ENSCAPP00000004555	annotation not available	PHD finger protein 21A.	0.698
ENSCAPP00000015013	RCOR1	ENSCAPP00000015013	ENSCAPP00000003310	annotation not available	REST corepressor 1.	0.998
ENSCAPP00000015013	RCOR3	ENSCAPP00000015013	ENSCAPP00000014024	annotation not available	REST corepressor 3.	0.952
ENSCAPP00000015419	HDAC1	ENSCAPP00000015419	ENSCAPP00000015327	annotation not available	Histone deacetylase 1.	0.998
ENSCAPP00000015419	HDAC2	ENSCAPP00000015419	ENSCAPP00000016491	annotation not available	Histone deacetylase 2.	0.997
ENSCAPP00000015419	KDM1A	ENSCAPP00000015419	ENSCAPP00000001968	annotation not available	Lysine demethylase 1A.	0.986
ENSCAPP00000015419	RCOR1	ENSCAPP00000015419	ENSCAPP00000003310	annotation not available	REST corepressor 1.	0.981
ENSCAPP00000015419	RCOR3	ENSCAPP00000015419	ENSCAPP00000014024	annotation not available	REST corepressor 3.	0.611
HDAC1	ENSCAPP00000015013	ENSCAPP00000015327	ENSCAPP00000015013	Histone deacetylase 1.	annotation not available	0.993
HDAC1	ENSCAPP00000015419	ENSCAPP00000015327	ENSCAPP00000015419	Histone deacetylase 1.	annotation not available	0.998
HDAC1	HDAC2	ENSCAPP00000015327	ENSCAPP00000016491	Histone deacetylase 1.	Histone deacetylase 2.	0.999
HDAC1	HMG20A	ENSCAPP00000015327	ENSCAPP00000013054	Histone deacetylase 1.	High mobility group 20A.	0.972
HDAC1	HMG20B	ENSCAPP00000015327	ENSCAPP00000012716	Histone deacetylase 1.	High mobility group 20B.	0.983
HDAC1	KDM1A	ENSCAPP00000015327	ENSCAPP00000001968	Histone deacetylase 1.	Lysine demethylase 1A.	0.994
HDAC1	PHF21A	ENSCAPP00000015327	ENSCAPP00000004555	Histone deacetylase 1.	PHD finger protein 21A.	0.986