PSMC6 protein (Cavia aperea) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

PSMC6

Proteasome 26S subunit, ATPase 6. (338 aa)

Predicted Functional Partners:

PSMD1

0.999

PSMC2

0.999

PSMC4

0.999

PSMA3

0.999

PSMD7

0.999

PSMD4

0.999

PSMD2

0.999

PSMC5

0.999

PSMD3

0.999

ENSCAPP00000014603

0.999

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000014603	PSMA3	ENSCAPP00000014603	ENSCAPP00000007893	annotation not available	Proteasome 20S subunit alpha 3.	0.997
ENSCAPP00000014603	PSMC2	ENSCAPP00000014603	ENSCAPP00000003383	annotation not available	Proteasome 26S subunit, ATPase 2.	0.999
ENSCAPP00000014603	PSMC4	ENSCAPP00000014603	ENSCAPP00000006665	annotation not available	Proteasome 26S subunit, ATPase 4.	0.999
ENSCAPP00000014603	PSMC5	ENSCAPP00000014603	ENSCAPP00000011918	annotation not available	Proteasome 26S subunit, ATPase 5.	0.999
ENSCAPP00000014603	PSMC6	ENSCAPP00000014603	ENSCAPP00000003327	annotation not available	Proteasome 26S subunit, ATPase 6.	0.999
ENSCAPP00000014603	PSMD1	ENSCAPP00000014603	ENSCAPP00000001110	annotation not available	Proteasome 26S subunit, non-ATPase 1.	0.999
ENSCAPP00000014603	PSMD2	ENSCAPP00000014603	ENSCAPP00000011143	annotation not available	Proteasome 26S subunit, non-ATPase 2.	0.999
ENSCAPP00000014603	PSMD3	ENSCAPP00000014603	ENSCAPP00000011963	annotation not available	Proteasome 26S subunit, non-ATPase 3.	0.999
ENSCAPP00000014603	PSMD4	ENSCAPP00000014603	ENSCAPP00000009665	annotation not available	Proteasome 26S subunit, non-ATPase 4.	0.999
ENSCAPP00000014603	PSMD7	ENSCAPP00000014603	ENSCAPP00000009236	annotation not available	Proteasome 26S subunit, non-ATPase 7.	0.999
PSMA3	ENSCAPP00000014603	ENSCAPP00000007893	ENSCAPP00000014603	Proteasome 20S subunit alpha 3.	annotation not available	0.997
PSMA3	PSMC2	ENSCAPP00000007893	ENSCAPP00000003383	Proteasome 20S subunit alpha 3.	Proteasome 26S subunit, ATPase 2.	0.999
PSMA3	PSMC4	ENSCAPP00000007893	ENSCAPP00000006665	Proteasome 20S subunit alpha 3.	Proteasome 26S subunit, ATPase 4.	0.997
PSMA3	PSMC5	ENSCAPP00000007893	ENSCAPP00000011918	Proteasome 20S subunit alpha 3.	Proteasome 26S subunit, ATPase 5.	0.997
PSMA3	PSMC6	ENSCAPP00000007893	ENSCAPP00000003327	Proteasome 20S subunit alpha 3.	Proteasome 26S subunit, ATPase 6.	0.999
PSMA3	PSMD1	ENSCAPP00000007893	ENSCAPP00000001110	Proteasome 20S subunit alpha 3.	Proteasome 26S subunit, non-ATPase 1.	0.997
PSMA3	PSMD2	ENSCAPP00000007893	ENSCAPP00000011143	Proteasome 20S subunit alpha 3.	Proteasome 26S subunit, non-ATPase 2.	0.997
PSMA3	PSMD3	ENSCAPP00000007893	ENSCAPP00000011963	Proteasome 20S subunit alpha 3.	Proteasome 26S subunit, non-ATPase 3.	0.995
PSMA3	PSMD4	ENSCAPP00000007893	ENSCAPP00000009665	Proteasome 20S subunit alpha 3.	Proteasome 26S subunit, non-ATPase 4.	0.997
PSMA3	PSMD7	ENSCAPP00000007893	ENSCAPP00000009236	Proteasome 20S subunit alpha 3.	Proteasome 26S subunit, non-ATPase 7.	0.999