Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000003328annotation not available (78 aa)    
Predicted Functional Partners:
TMEM106C
Transmembrane protein 106C.
 
  
   0.935
LMAN2L
Lectin, mannose binding 2 like.
    
 
 0.750
GRN
Granulin precursor.
      
 0.715
LMAN2
Lectin, mannose binding 2.
    
 
 0.693
ENSCAPP00000008344
annotation not available
      
 0.691
CHMP2B
Charged multivesicular body protein 2B.
    
 
 0.642
C9orf72
C9orf72-SMCR8 complex subunit.
      
 0.640
TARDBP
TAR DNA binding protein.
    
 
 0.613
TMPRSS4
Transmembrane serine protease 4.
    
 0.607
ENSCAPP00000008280
annotation not available
      
 0.605
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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