Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCDC62Coiled-coil domain containing 62. (568 aa)    
Predicted Functional Partners:
SPATA16
Spermatogenesis associated 16.
      
 0.857
PICK1
Protein interacting with PRKCA 1.
      
 0.742
ENSCAPP00000003575
annotation not available
      
 0.701
DENR
Density regulated re-initiation and release factor.
      
 0.686
ARRDC5
Arrestin domain containing 5.
      
 0.672
AGFG1
ArfGAP with FG repeats 1.
      
 0.618
GOPC
Golgi associated PDZ and coiled-coil motif containing.
      
 0.577
HIP1R
Huntingtin interacting protein 1 related.
      
 0.573
HIPK4
Homeodomain interacting protein kinase 4.
      
 0.572
MCCC1
methylcrotonoyl-CoA carboxylase 1.
      
 0.571
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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