Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PIPOXPipecolic acid and sarcosine oxidase. (311 aa)    
Predicted Functional Partners:
SARDH
Sarcosine dehydrogenase.
  
 0.980
AGXT
Alanine--glyoxylate and serine--pyruvate aminotransferase.
  
 
 0.967
ELP6
Elongator acetyltransferase complex subunit 6.
    
   0.959
ENSCAPP00000008168
annotation not available
    
 
 0.959
ENSCAPP00000009905
annotation not available
    
   0.959
ENSCAPP00000002410
annotation not available
   
 
 0.956
DMGDH
Dimethylglycine dehydrogenase.
  
 0.951
AGXT2
Alanine--glyoxylate aminotransferase 2.
  
 
 0.947
GLDC
Glycine decarboxylase.
    
 0.940
SHMT1
Serine hydroxymethyltransferase 1.
    
 0.934
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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