STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIPOXPipecolic acid and sarcosine oxidase. (311 aa)    
Predicted Functional Partners:
DMGDH
Dimethylglycine dehydrogenase.
  
 0.967
AGXT
Alanine--glyoxylate and serine--pyruvate aminotransferase.
  
 
 0.957
SARDH
Sarcosine dehydrogenase.
  
 0.950
AGXT2
Alanine--glyoxylate aminotransferase 2.
  
 
 0.944
GCAT
Glycine C-acetyltransferase.
    
 0.933
GLDC
Glycine decarboxylase.
  
 
 0.932
ENSCAPP00000002410
annotation not available
   
 
 0.932
SHMT1
Serine hydroxymethyltransferase 1.
    
 0.931
SHMT2
Serine hydroxymethyltransferase 2.
    
 0.931
ENSCAPP00000002837
annotation not available
    
 0.915
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.