STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VTI1AVesicle transport through interaction with t-SNAREs 1A. (185 aa)    
Predicted Functional Partners:
STX16
Syntaxin 16.
   
 0.999
STX6
Syntaxin 6.
    
 0.999
STX5
Syntaxin 5.
    
 0.999
ENSCAPP00000011016
annotation not available
    
 0.997
VAMP8
Vesicle associated membrane protein 8.
   
 0.997
VPS45
Vacuolar protein sorting 45 homolog.
   
 0.996
STX12
Syntaxin 12.
   
 0.994
SEC22B
SEC22 homolog B, vesicle trafficking protein (gene/pseudogene).
   
 0.993
STX7
Syntaxin 7.
   
 0.992
VAMP4
Vesicle associated membrane protein 4.
   
 0.989
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.