Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000003490annotation not available (133 aa)    
Predicted Functional Partners:
ENSCAPP00000011618
annotation not available
  
  
 0.965
SDSL
Serine dehydratase like.
  
  
 0.962
PSPH
Phosphoserine phosphatase.
    
 0.948
SHMT1
Serine hydroxymethyltransferase 1.
    
 0.938
SHMT2
Serine hydroxymethyltransferase 2.
    
 0.938
AGXT
Alanine--glyoxylate and serine--pyruvate aminotransferase.
  
 
 0.935
ENSCAPP00000018242
annotation not available
  
 
 0.931
SPTLC1
Serine palmitoyltransferase long chain base subunit 1.
   
 0.921
DAO
D-amino acid oxidase.
   
 
 0.918
THNSL2
Threonine synthase like 2.
  
 
 0.907
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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