STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC88BCoiled-coil domain containing 88B. (1411 aa)    
Predicted Functional Partners:
MET
MET proto-oncogene, receptor tyrosine kinase.
    
 0.773
MST1R
Macrophage stimulating 1 receptor.
    
 0.773
ENSCAPP00000010800
annotation not available
    
 0.723
TBC1D31
TBC1 domain family member 31.
    
 0.718
PDPK1
3-phosphoinositide dependent protein kinase 1.
    
  0.715
ENSCAPP00000010525
annotation not available
    
  0.704
DYNC1LI1
Dynein cytoplasmic 1 light intermediate chain 1.
    
 0.699
GPR137
G protein-coupled receptor 137.
      
 0.683
RASAL3
RAS protein activator like 3.
   
 0.653
KCNK4
Potassium two pore domain channel subfamily K member 4.
      
 0.652
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.