STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC88BCoiled-coil domain containing 88B. (1411 aa)    
Predicted Functional Partners:
MET
MET proto-oncogene, receptor tyrosine kinase.
    
 0.853
MST1R
Macrophage stimulating 1 receptor.
    
 0.853
ENSCAPP00000000321
annotation not available
    
 0.756
MC1R
Melanocortin 1 receptor.
    
 0.756
TBC1D31
TBC1 domain family member 31.
    
 0.747
PAFAH1B1
Platelet activating factor acetylhydrolase 1b regulatory subunit 1.
    
 0.745
DYNC1LI1
Dynein cytoplasmic 1 light intermediate chain 1.
    
 0.724
ENSCAPP00000008774
annotation not available
   
 0.723
FAM193B
Family with sequence similarity 193 member B.
   
 0.723
ENSCAPP00000009010
annotation not available
    
 0.719
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.