KPNA7 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KPNA7

Karyopherin subunit alpha 7. (494 aa)

Predicted Functional Partners:

KPNB1

0.990

KPNA4

0.956

KPNA3

0.951

ENSCAPP00000015628

0.940

ENSCAPP00000018284

0.935

ENSCAPP00000009156

0.933

SNUPN

0.920

MYBBP1A

0.919

NUP50

0.859

ENSCAPP00000015456

0.857

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000009156	ENSCAPP00000015456	ENSCAPP00000009156	ENSCAPP00000015456	annotation not available	annotation not available	0.984
ENSCAPP00000009156	ENSCAPP00000015628	ENSCAPP00000009156	ENSCAPP00000015628	annotation not available	annotation not available	0.943
ENSCAPP00000009156	ENSCAPP00000018284	ENSCAPP00000009156	ENSCAPP00000018284	annotation not available	annotation not available	0.999
ENSCAPP00000009156	KPNA3	ENSCAPP00000009156	ENSCAPP00000001006	annotation not available	Karyopherin subunit alpha 3.	0.965
ENSCAPP00000009156	KPNA4	ENSCAPP00000009156	ENSCAPP00000018294	annotation not available	Karyopherin subunit alpha 4.	0.964
ENSCAPP00000009156	KPNA7	ENSCAPP00000009156	ENSCAPP00000003543	annotation not available	Karyopherin subunit alpha 7.	0.933
ENSCAPP00000009156	KPNB1	ENSCAPP00000009156	ENSCAPP00000013599	annotation not available	Karyopherin subunit beta 1.	0.999
ENSCAPP00000009156	MYBBP1A	ENSCAPP00000009156	ENSCAPP00000008823	annotation not available	MYB binding protein 1a.	0.919
ENSCAPP00000009156	NUP50	ENSCAPP00000009156	ENSCAPP00000011941	annotation not available	Nucleoporin 50.	0.968
ENSCAPP00000009156	SNUPN	ENSCAPP00000009156	ENSCAPP00000002270	annotation not available	Snurportin 1.	0.917
ENSCAPP00000015456	ENSCAPP00000009156	ENSCAPP00000015456	ENSCAPP00000009156	annotation not available	annotation not available	0.984
ENSCAPP00000015456	ENSCAPP00000018284	ENSCAPP00000015456	ENSCAPP00000018284	annotation not available	annotation not available	0.787
ENSCAPP00000015456	KPNA3	ENSCAPP00000015456	ENSCAPP00000001006	annotation not available	Karyopherin subunit alpha 3.	0.990
ENSCAPP00000015456	KPNA4	ENSCAPP00000015456	ENSCAPP00000018294	annotation not available	Karyopherin subunit alpha 4.	0.990
ENSCAPP00000015456	KPNA7	ENSCAPP00000015456	ENSCAPP00000003543	annotation not available	Karyopherin subunit alpha 7.	0.857
ENSCAPP00000015628	ENSCAPP00000009156	ENSCAPP00000015628	ENSCAPP00000009156	annotation not available	annotation not available	0.943
ENSCAPP00000015628	ENSCAPP00000018284	ENSCAPP00000015628	ENSCAPP00000018284	annotation not available	annotation not available	0.952
ENSCAPP00000015628	KPNA3	ENSCAPP00000015628	ENSCAPP00000001006	annotation not available	Karyopherin subunit alpha 3.	0.943
ENSCAPP00000015628	KPNA4	ENSCAPP00000015628	ENSCAPP00000018294	annotation not available	Karyopherin subunit alpha 4.	0.943
ENSCAPP00000015628	KPNA7	ENSCAPP00000015628	ENSCAPP00000003543	annotation not available	Karyopherin subunit alpha 7.	0.940