STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIG4DNA ligase 4. (905 aa)    
Predicted Functional Partners:
XRCC6
X-ray repair cross complementing 6.
   
 0.997
PRKDC
Protein kinase, DNA-activated, catalytic subunit.
    
 0.993
XRCC1
X-ray repair cross complementing 1.
   
 0.986
ENSCAPP00000008386
annotation not available
   
 0.981
ENSCAPP00000013410
annotation not available
   
 0.976
ATM
ATM serine/threonine kinase.
    
 0.975
ERCC4
ERCC excision repair 4, endonuclease catalytic subunit.
   
 0.968
MSH6
mutS homolog 6.
   
 0.966
MSH2
mutS homolog 2.
   
 0.965
RAD23A
RAD23 homolog A, nucleotide excision repair protein.
    
 0.964
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.