STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PCDHGA4Protocadherin gamma subfamily A, 4. (861 aa)    
Predicted Functional Partners:
PCDHGA10
Protocadherin gamma subfamily A, 10.
   
   0.995
PCDHGC4
Protocadherin gamma subfamily C, 4.
   
    0.652
ENSCAPP00000011160
annotation not available
    
  0.531
FAT4
FAT atypical cadherin 4.
    
  0.511
FAT1
FAT atypical cadherin 1.
    
  0.495
FAT2
FAT atypical cadherin 2.
    
  0.495
FANCL
FA complementation group L.
     
 0.449
CTNNA1
Catenin alpha 1.
    
 0.432
CTNNA2
Catenin alpha 2.
    
 0.432
APC
APC regulator of WNT signaling pathway.
     
 0.426
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.