Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRDM1PR/SET domain 1. (813 aa)    
Predicted Functional Partners:
HDAC2
Histone deacetylase 2.
    
 0.967
ENSCAPP00000003241
annotation not available
    
 0.945
EHMT2
Euchromatic histone lysine methyltransferase 2.
    
 0.945
HDAC1
Histone deacetylase 1.
    
 0.876
FBXO11
F-box protein 11.
    
 
 0.875
KIZ
Kizuna centrosomal protein.
    
  0.873
TFAP2C
Transcription factor AP-2 gamma.
     
 0.863
ENSCAPP00000010050
annotation not available
    
 0.836
ENSCAPP00000010575
annotation not available
    
   0.834
PRMT5
Protein arginine methyltransferase 5.
    
 
 0.830
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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