STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBM17RNA binding motif protein 17. (337 aa)    
Predicted Functional Partners:
DHX15
DEAH-box helicase 15.
   
 0.999
U2SURP
U2 snRNP associated SURP domain containing.
   
 0.998
CHERP
Calcium homeostasis endoplasmic reticulum protein.
   
 0.996
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
   
 0.994
SMNDC1
Survival motor neuron domain containing 1.
   
 
  0.982
ENSCAPP00000009270
annotation not available
   
 
 0.982
PHF5A
PHD finger protein 5A.
   
 
 0.981
ENSCAPP00000007148
annotation not available
  
 
0.981
SF3B1
Splicing factor 3b subunit 1.
   
 0.961
SUGP1
SURP and G-patch domain containing 1.
   
 
 0.957
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.