Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBM17RNA binding motif protein 17. (337 aa)    
Predicted Functional Partners:
CHERP
Calcium homeostasis endoplasmic reticulum protein.
   
 0.998
DHX15
DEAH-box helicase 15.
   
 0.998
U2SURP
U2 snRNP associated SURP domain containing.
   
 0.998
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
   
 0.997
ENSCAPP00000001654
annotation not available
    
 0.994
SF3A3
Splicing factor 3a subunit 3.
   
 0.993
SF3B1
Splicing factor 3b subunit 1.
   
 0.993
SF3A1
Splicing factor 3a subunit 1.
   
 0.991
SF3B2
Splicing factor 3b subunit 2.
   
 0.987
SNRPB2
Small nuclear ribonucleoprotein polypeptide B2.
   
 0.987
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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