DDX56 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

DDX56

DEAD-box helicase 56. (473 aa)

Predicted Functional Partners:

RPF2

0.992

ENSCAPP00000014188

0.992

CEBPZ

0.991

NOP58

0.990

ENSCAPP00000010582

0.989

GTPBP4

0.987

P2RY1

0.987

NOC2L

0.986

RBM28

0.986

DDX24

0.983

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEBPZ	DDX24	ENSCAPP00000017475	ENSCAPP00000005246	CCAAT enhancer binding protein zeta.	DEAD-box helicase 24.	0.987
CEBPZ	DDX56	ENSCAPP00000017475	ENSCAPP00000003563	CCAAT enhancer binding protein zeta.	DEAD-box helicase 56.	0.991
CEBPZ	ENSCAPP00000010582	ENSCAPP00000017475	ENSCAPP00000010582	CCAAT enhancer binding protein zeta.	annotation not available	0.996
CEBPZ	ENSCAPP00000014188	ENSCAPP00000017475	ENSCAPP00000014188	CCAAT enhancer binding protein zeta.	annotation not available	0.996
CEBPZ	GTPBP4	ENSCAPP00000017475	ENSCAPP00000001224	CCAAT enhancer binding protein zeta.	GTP binding protein 4.	0.997
CEBPZ	NOC2L	ENSCAPP00000017475	ENSCAPP00000004318	CCAAT enhancer binding protein zeta.	NOC2 like nucleolar associated transcriptional repressor.	0.999
CEBPZ	NOP58	ENSCAPP00000017475	ENSCAPP00000012279	CCAAT enhancer binding protein zeta.	NOP58 ribonucleoprotein.	0.992
CEBPZ	P2RY1	ENSCAPP00000017475	ENSCAPP00000002291	CCAAT enhancer binding protein zeta.	Purinergic receptor P2Y1.	0.996
CEBPZ	RBM28	ENSCAPP00000017475	ENSCAPP00000012344	CCAAT enhancer binding protein zeta.	RNA binding motif protein 28.	0.992
CEBPZ	RPF2	ENSCAPP00000017475	ENSCAPP00000013679	CCAAT enhancer binding protein zeta.	Ribosome production factor 2 homolog.	0.996
DDX24	CEBPZ	ENSCAPP00000005246	ENSCAPP00000017475	DEAD-box helicase 24.	CCAAT enhancer binding protein zeta.	0.987
DDX24	DDX56	ENSCAPP00000005246	ENSCAPP00000003563	DEAD-box helicase 24.	DEAD-box helicase 56.	0.983
DDX24	ENSCAPP00000010582	ENSCAPP00000005246	ENSCAPP00000010582	DEAD-box helicase 24.	annotation not available	0.986
DDX24	ENSCAPP00000014188	ENSCAPP00000005246	ENSCAPP00000014188	DEAD-box helicase 24.	annotation not available	0.990
DDX24	GTPBP4	ENSCAPP00000005246	ENSCAPP00000001224	DEAD-box helicase 24.	GTP binding protein 4.	0.969
DDX24	NOC2L	ENSCAPP00000005246	ENSCAPP00000004318	DEAD-box helicase 24.	NOC2 like nucleolar associated transcriptional repressor.	0.988
DDX24	NOP58	ENSCAPP00000005246	ENSCAPP00000012279	DEAD-box helicase 24.	NOP58 ribonucleoprotein.	0.910
DDX24	P2RY1	ENSCAPP00000005246	ENSCAPP00000002291	DEAD-box helicase 24.	Purinergic receptor P2Y1.	0.963
DDX24	RBM28	ENSCAPP00000005246	ENSCAPP00000012344	DEAD-box helicase 24.	RNA binding motif protein 28.	0.991
DDX24	RPF2	ENSCAPP00000005246	ENSCAPP00000013679	DEAD-box helicase 24.	Ribosome production factor 2 homolog.	0.970