STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX56DEAD-box helicase 56. (473 aa)    
Predicted Functional Partners:
RPF2
Ribosome production factor 2 homolog.
   
 0.993
CEBPZ
CCAAT enhancer binding protein zeta.
   
 0.989
P2RY1
Purinergic receptor P2Y1.
   
  0.980
BOP1
BOP1 ribosomal biogenesis factor.
   
 0.973
ENSCAPP00000010582
annotation not available
   
 0.973
BRIX1
Biogenesis of ribosomes BRX1.
   
 0.972
ENSCAPP00000014188
annotation not available
   
 0.971
NOC2L
NOC2 like nucleolar associated transcriptional repressor.
   
 0.970
RBM34
RNA binding motif protein 34.
   
 0.969
RBM28
RNA binding motif protein 28.
   
 
 0.968
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.