Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TAL1TAL bHLH transcription factor 1, erythroid differentiation factor. (180 aa)    
Predicted Functional Partners:
LMO2
LIM domain only 2.
   
 0.997
LDB1
LIM domain binding 1.
    
 0.996
GATA1
GATA binding protein 1.
   
 0.993
GATA3
GATA binding protein 3.
   
 0.991
TCF3
Transcription factor 3.
    
 0.991
LDB2
LIM domain binding 2.
    
 0.967
CBFA2T3
CBFA2/RUNX1 partner transcriptional co-repressor 3.
    
 0.952
ENSCAPP00000011786
annotation not available
    
 0.945
TCF4
Transcription factor 4.
    
 0.945
HDAC1
Histone deacetylase 1.
    
 
 0.936
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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