STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TBCCD1TBCC domain containing 1. (501 aa)    
Predicted Functional Partners:
SHQ1
SHQ1, H/ACA ribonucleoprotein assembly factor.
   
    0.637
ENSCAPP00000001485
annotation not available
    
 
 0.585
PPP2R3A
Protein phosphatase 2 regulatory subunit B''alpha.
    
   0.579
PPP2R3C
Protein phosphatase 2 regulatory subunit B''gamma.
    
   0.579
ENSCAPP00000010410
annotation not available
      
 0.568
GINS1
GINS complex subunit 1.
      
 0.563
GPR153
G protein-coupled receptor 153.
      
 0.563
CRTAM
Cytotoxic and regulatory T cell molecule.
      
 0.562
BCKDHB
Branched chain keto acid dehydrogenase E1 subunit beta.
      
 0.561
BVES
Blood vessel epicardial substance.
      
 0.559
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.