Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C12orf4Chromosome 12 open reading frame 4. (535 aa)    
Predicted Functional Partners:
PPP1R21
Protein phosphatase 1 regulatory subunit 21.
    
 
 0.989
TBCK
TBC1 domain containing kinase.
    
 
 0.985
ENSCAPP00000000013
annotation not available
   
   0.955
GATD1
Glutamine amidotransferase like class 1 domain containing 1.
    
   0.844
TBC1D31
TBC1 domain family member 31.
    
 
 0.817
ENSCAPP00000000252
annotation not available
   
   0.719
CRYZ
Crystallin zeta.
   
   0.581
CENPJ
Centromere protein J.
    
 
 0.573
ENSCAPP00000010562
annotation not available
    
   0.569
TMEM106C
Transmembrane protein 106C.
      
 0.567
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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