SPTAN1 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

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Textmining

[Homology]

Score

SPTAN1

Spectrin alpha, non-erythrocytic 1. (2407 aa)

Predicted Functional Partners:

SPTBN2

0.997

SPTBN1

0.994

ENSCAPP00000016104

0.993

SPTB

0.990

ENSCAPP00000000271

0.986

ENSCAPP00000008032

0.977

ENSCAPP00000015927

0.961

ENSCAPP00000012429

0.933

ENSCAPP00000004580

0.915

ENSCAPP00000009121

0.911

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000000271	ENSCAPP00000012429	ENSCAPP00000000271	ENSCAPP00000012429	annotation not available	annotation not available	0.633
ENSCAPP00000000271	ENSCAPP00000015927	ENSCAPP00000000271	ENSCAPP00000015927	annotation not available	annotation not available	0.895
ENSCAPP00000000271	ENSCAPP00000016104	ENSCAPP00000000271	ENSCAPP00000016104	annotation not available	annotation not available	0.953
ENSCAPP00000000271	SPTAN1	ENSCAPP00000000271	ENSCAPP00000003587	annotation not available	Spectrin alpha, non-erythrocytic 1.	0.986
ENSCAPP00000000271	SPTB	ENSCAPP00000000271	ENSCAPP00000010748	annotation not available	Spectrin beta, erythrocytic.	0.807
ENSCAPP00000000271	SPTBN1	ENSCAPP00000000271	ENSCAPP00000007882	annotation not available	Spectrin beta, non-erythrocytic 1.	0.834
ENSCAPP00000000271	SPTBN2	ENSCAPP00000000271	ENSCAPP00000017859	annotation not available	Spectrin beta, non-erythrocytic 2.	0.900
ENSCAPP00000004580	ENSCAPP00000008032	ENSCAPP00000004580	ENSCAPP00000008032	annotation not available	annotation not available	0.947
ENSCAPP00000004580	ENSCAPP00000012429	ENSCAPP00000004580	ENSCAPP00000012429	annotation not available	annotation not available	0.950
ENSCAPP00000004580	SPTAN1	ENSCAPP00000004580	ENSCAPP00000003587	annotation not available	Spectrin alpha, non-erythrocytic 1.	0.915
ENSCAPP00000008032	ENSCAPP00000004580	ENSCAPP00000008032	ENSCAPP00000004580	annotation not available	annotation not available	0.947
ENSCAPP00000008032	ENSCAPP00000012429	ENSCAPP00000008032	ENSCAPP00000012429	annotation not available	annotation not available	0.993
ENSCAPP00000008032	SPTAN1	ENSCAPP00000008032	ENSCAPP00000003587	annotation not available	Spectrin alpha, non-erythrocytic 1.	0.977
ENSCAPP00000009121	SPTAN1	ENSCAPP00000009121	ENSCAPP00000003587	annotation not available	Spectrin alpha, non-erythrocytic 1.	0.911
ENSCAPP00000012429	ENSCAPP00000000271	ENSCAPP00000012429	ENSCAPP00000000271	annotation not available	annotation not available	0.633
ENSCAPP00000012429	ENSCAPP00000004580	ENSCAPP00000012429	ENSCAPP00000004580	annotation not available	annotation not available	0.950
ENSCAPP00000012429	ENSCAPP00000008032	ENSCAPP00000012429	ENSCAPP00000008032	annotation not available	annotation not available	0.993
ENSCAPP00000012429	ENSCAPP00000015927	ENSCAPP00000012429	ENSCAPP00000015927	annotation not available	annotation not available	0.633
ENSCAPP00000012429	SPTAN1	ENSCAPP00000012429	ENSCAPP00000003587	annotation not available	Spectrin alpha, non-erythrocytic 1.	0.933
ENSCAPP00000012429	SPTBN2	ENSCAPP00000012429	ENSCAPP00000017859	annotation not available	Spectrin beta, non-erythrocytic 2.	0.653