ENSCAPP00000003591 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

ENSCAPP00000003591

annotation not available (257 aa)

Predicted Functional Partners:

TTC37

0.999

WDR61

0.997

EXOSC3

0.983

EXOSC2

0.981

EXOSC9

0.981

ENSCAPP00000015857

0.974

EXOSC4

0.974

ENSCAPP00000002021

0.972

EXOSC7

0.966

ENSCAPP00000002117

0.963

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000002021	ENSCAPP00000002117	ENSCAPP00000002021	ENSCAPP00000002117	annotation not available	annotation not available	0.870
ENSCAPP00000002021	ENSCAPP00000003591	ENSCAPP00000002021	ENSCAPP00000003591	annotation not available	annotation not available	0.972
ENSCAPP00000002021	ENSCAPP00000015857	ENSCAPP00000002021	ENSCAPP00000015857	annotation not available	annotation not available	0.997
ENSCAPP00000002021	EXOSC2	ENSCAPP00000002021	ENSCAPP00000000711	annotation not available	Exosome component 2.	0.992
ENSCAPP00000002021	EXOSC3	ENSCAPP00000002021	ENSCAPP00000001427	annotation not available	Exosome component 3.	0.996
ENSCAPP00000002021	EXOSC4	ENSCAPP00000002021	ENSCAPP00000018602	annotation not available	Exosome component 4.	0.997
ENSCAPP00000002021	EXOSC7	ENSCAPP00000002021	ENSCAPP00000016622	annotation not available	Exosome component 7.	0.997
ENSCAPP00000002021	EXOSC9	ENSCAPP00000002021	ENSCAPP00000005219	annotation not available	Exosome component 9.	0.997
ENSCAPP00000002021	TTC37	ENSCAPP00000002021	ENSCAPP00000013300	annotation not available	Tetratricopeptide repeat domain 37.	0.971
ENSCAPP00000002021	WDR61	ENSCAPP00000002021	ENSCAPP00000005256	annotation not available	WD repeat domain 61.	0.967
ENSCAPP00000002117	ENSCAPP00000002021	ENSCAPP00000002117	ENSCAPP00000002021	annotation not available	annotation not available	0.870
ENSCAPP00000002117	ENSCAPP00000003591	ENSCAPP00000002117	ENSCAPP00000003591	annotation not available	annotation not available	0.963
ENSCAPP00000002117	ENSCAPP00000015857	ENSCAPP00000002117	ENSCAPP00000015857	annotation not available	annotation not available	0.815
ENSCAPP00000002117	EXOSC2	ENSCAPP00000002117	ENSCAPP00000000711	annotation not available	Exosome component 2.	0.816
ENSCAPP00000002117	EXOSC3	ENSCAPP00000002117	ENSCAPP00000001427	annotation not available	Exosome component 3.	0.803
ENSCAPP00000002117	EXOSC4	ENSCAPP00000002117	ENSCAPP00000018602	annotation not available	Exosome component 4.	0.951
ENSCAPP00000002117	EXOSC7	ENSCAPP00000002117	ENSCAPP00000016622	annotation not available	Exosome component 7.	0.745
ENSCAPP00000002117	EXOSC9	ENSCAPP00000002117	ENSCAPP00000005219	annotation not available	Exosome component 9.	0.883
ENSCAPP00000002117	TTC37	ENSCAPP00000002117	ENSCAPP00000013300	annotation not available	Tetratricopeptide repeat domain 37.	0.930
ENSCAPP00000002117	WDR61	ENSCAPP00000002117	ENSCAPP00000005256	annotation not available	WD repeat domain 61.	0.902