IFT22 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Co-expression

Experiments

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[Homology]

Score

IFT22

Intraflagellar transport 22. (177 aa)

Predicted Functional Partners:

ENSCAPP00000001832

0.999

IFT27

0.999

IFT57

0.999

IFT46

0.999

IFT81

0.999

ENSCAPP00000008760

0.998

HSPB11

0.998

IFT88

0.998

ENSCAPP00000016241

0.998

IFT172

0.998

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000001832	ENSCAPP00000008760	ENSCAPP00000001832	ENSCAPP00000008760	annotation not available	annotation not available	0.998
ENSCAPP00000001832	ENSCAPP00000016241	ENSCAPP00000001832	ENSCAPP00000016241	annotation not available	annotation not available	0.999
ENSCAPP00000001832	HSPB11	ENSCAPP00000001832	ENSCAPP00000011671	annotation not available	Heat shock protein family B (small) member 11.	0.995
ENSCAPP00000001832	IFT172	ENSCAPP00000001832	ENSCAPP00000017314	annotation not available	Intraflagellar transport 172.	0.993
ENSCAPP00000001832	IFT22	ENSCAPP00000001832	ENSCAPP00000003594	annotation not available	Intraflagellar transport 22.	0.999
ENSCAPP00000001832	IFT27	ENSCAPP00000001832	ENSCAPP00000009542	annotation not available	Intraflagellar transport 27.	0.999
ENSCAPP00000001832	IFT46	ENSCAPP00000001832	ENSCAPP00000015858	annotation not available	Intraflagellar transport 46.	0.999
ENSCAPP00000001832	IFT57	ENSCAPP00000001832	ENSCAPP00000011105	annotation not available	Intraflagellar transport 57.	0.999
ENSCAPP00000001832	IFT81	ENSCAPP00000001832	ENSCAPP00000017294	annotation not available	Intraflagellar transport 81.	0.999
ENSCAPP00000001832	IFT88	ENSCAPP00000001832	ENSCAPP00000015202	annotation not available	Intraflagellar transport 88.	0.997
ENSCAPP00000008760	ENSCAPP00000001832	ENSCAPP00000008760	ENSCAPP00000001832	annotation not available	annotation not available	0.998
ENSCAPP00000008760	ENSCAPP00000016241	ENSCAPP00000008760	ENSCAPP00000016241	annotation not available	annotation not available	0.998
ENSCAPP00000008760	HSPB11	ENSCAPP00000008760	ENSCAPP00000011671	annotation not available	Heat shock protein family B (small) member 11.	0.997
ENSCAPP00000008760	IFT172	ENSCAPP00000008760	ENSCAPP00000017314	annotation not available	Intraflagellar transport 172.	0.998
ENSCAPP00000008760	IFT22	ENSCAPP00000008760	ENSCAPP00000003594	annotation not available	Intraflagellar transport 22.	0.998
ENSCAPP00000008760	IFT27	ENSCAPP00000008760	ENSCAPP00000009542	annotation not available	Intraflagellar transport 27.	0.998
ENSCAPP00000008760	IFT46	ENSCAPP00000008760	ENSCAPP00000015858	annotation not available	Intraflagellar transport 46.	0.998
ENSCAPP00000008760	IFT57	ENSCAPP00000008760	ENSCAPP00000011105	annotation not available	Intraflagellar transport 57.	0.998
ENSCAPP00000008760	IFT81	ENSCAPP00000008760	ENSCAPP00000017294	annotation not available	Intraflagellar transport 81.	0.998
ENSCAPP00000008760	IFT88	ENSCAPP00000008760	ENSCAPP00000015202	annotation not available	Intraflagellar transport 88.	0.998